Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78580 1538 / 0 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G16980 1066 / 0 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT4G27550 1062 / 0 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1) AT1G17000 1006 / 0 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1) AT4G17770 460 / 4e-148 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G06410 445 / 1e-142 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G68020 442 / 1e-141 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 429 / 3e-136 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G60140 428 / 5e-136 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G70290 418 / 3e-132 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G383600 [exp] 1759 / 0 AT1G78580 1493 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.004G064600 [exp] 1392 / 0 AT1G78580 1305 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Potri.010G104500 [exp] 460 / 2e-148 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.001G139500 [exp] 454 / 5e-146 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.003G094500 [exp] 452 / 3e-145 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.008G136500 [exp] 451 / 5e-145 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 438 / 6e-140 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 432 / 1e-137 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 426 / 2e-135 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005559 [exp] 1582 / 0 AT1G78580 1507 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10013694 [exp] 1576 / 0 AT1G78580 1501 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10015243 [exp] 1344 / 0 AT1G78580 1354 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10005412 [exp] 1341 / 0 AT1G78580 1338 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) Lus10034585 [exp] 454 / 6e-146 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 442 / 2e-141 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10007311 [exp] 430 / 1e-136 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 429 / 1e-136 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015509 [exp] 427 / 1e-135 AT2G18700 1168 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Lus10005425 [exp] 426 / 2e-135 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.011G103900.2 pacid=42781564 polypeptide=Potri.011G103900.2.p locus=Potri.011G103900 ID=Potri.011G103900.2.v4.1 annot-version=v4.1 ATGCCTGGAAACCAGTACAACGGTAACTCTACCCTTAACTCAGGTCGTGTCGGACGGCTCTTAAAGATAAGAGAGCAAAGGAGAAGTATCAGGTCTGCCT ATTCAAATGAGGTAACTGATAACCATAGAGGAACTGAAGCATGTGAAAATGATTTGCGCACGCGAGAAGGTGACAGCTTAAACAATTCATTTATCGAACA ATACTTGGAAGGTGCTATCGCAGAGGGATATGAAAAGCTGGATGTCAGGCCTTTAAGGCAACGGCTGTTGGTGGTAGCTAATAGACTACCTGTATCTGCA GTTAGAAGAGGTGAAGACTCATGGTCTTTGGAGATAAGTGCTGGGGGCTTAGTCACTGCTCTTCTAGGTGTAAAGGAGTTTGAGGCGAAATGGATTGGTT GGGCTGGAGTTAATGTGCCAGATGAAGTTGGCCAGAAGGCGCTTACTGAAGCTTTGGCTGAAAAGAGGTGTATTCCGGTATTCCTTGACGAAGAGATTGT TCATCAATATTATAATGGCTACTGCAACAATATATTGTGGCCCCTCTTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCCACGACCAGAAGTTTC CAGTCTCAGTTTGCTGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTGGTGAATCAGCACTATGAGGAGGGTGATGTTGTCTGGTGCCATGATTACC ATTTGATGTACCTCCCAAAATGCCTTAAGGAATACAATAATAATATGAAAGTTGGTTGGTTTCTCCACACACCCTTTCCTTCTTCTGAAATCCATAGGAC GCTGCCATCTCGATCAGACCTACTACGTTCTGTTCTTGCAGCCGATTTAGTTGGGTTTCACACCTATGACTATGCAAGACATTTTGTTAGTGCTTGTACT CGTATTCTTGGGCTAGAGGGCACACCTGAAGGCGTTGAGGATCAAGGGAGGCTGACTCGAGTTGCTGCGTTTCCCATTGGGATAGACTCAGATCGGTTCA TAAGAGCTCTTGAACTCCCTCAAGTCCAGGAACACATCAAAGAACTGAAGGAAAGATTTGCTGGCCGAAAGGTAATGCTAGGTGTTGACCGCCTTGATAT GATTAAAGGAATTCCACAGAAGATTCTTGCATTTGAAAAATTTCTCGAGGAGAATTCCGCCTGGCGTGATAAAGTTGTTCTACTGCAGATTGCTGTGCCA ACAAGAACAGATGTTCCTGAGTATCAAAAACTTACAAGCCAAGTTCATGAAATTGTTGGACGCATTAATGGCAGATTTGGAACATTAACTGCTGTTCCAA TACACCACCTGGATCGCTCTCTCGACTTCCATGCCTTGTGTGCTTTATATGCAGTTACCGATGTTGCTCTTGTAACTTCTTTAAGGGATGGAATGAATCT CGTCAGTTATGAGTTTGTAGCATGCCAAGATTCGAAGAAAGGTGTGCTCATTCTTAGTGAGTTTGCAGGTGCAGCCCAATCTCTAGGTGCTGGAGCAATC CTTGTGAATCCTTGGAACATCACTGAAGTTGCTGATTCAATACGCCAAGCTCTAACTATGTCCCCTGAAGAAAGAGAGAAGCGACATCGCCACAACTTTG TCCATGTGACAACCCACACTGCTCAAGAATGGGCTGAAACTTTTGTGAGTGAACTAGATGATACAGTTATCGAGGCACAACTAAGGACCAAGCAAGTGCC ACCTGCACTTCCAGAAGAAGATGCAATTAGTCGTTATTTGCAGTCTACTAATCGATTGCTCATACTGGGATTCAATGCAACATTGACTGAGCCAGCGGAC ACTCCTGGGAGAAGAGCTGATCAAATTAAAGAAATGGAACTTAAATTGCACCCAGAGTTAAAAGAAGCATTGACAGCACTTTGCAGTGATAGAAAGACAA CCATTGTTGTTCTCAGTGGGAGTGACCGAAAAACATTAGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCAGAACATGGAATGTTTTTGCGACT TACAAAGGGAGAATGGATGACAACAATGCCAGAACACTTAAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAACGTACTCCC CGATCACATTTTGAACGCTGTGAAACATCACTTGTATGGAATTACAAGTATGCAGATGTTGAATTTGGGAGGCTTCAAGCAAGGGATATGTTGCAACACC TCTGGACGGGCCCAATTTCAAATGCCTCTGTTGATGTGGTCCAAGGGAATCGATCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCTATTGA TCGTATACTGGGAGAGATTGTCCATAGTAAATCCATGACAACACCAATTGATTATGTCCTATGCATTGGCCATTTTCTGGGAAAGGATGAAGATGTGTAC ACCTTCTTTGAGCCAGAGCTCCCTTCTGATAGCTTAGCTGTTGCAAGAACTAAGCAAAATGATGGACTAAAATCGCCCATTGATAGACGACCTTCTATGA AGCTTCCAGCCATTAGAAGCGTGTCTAAATCATCTCAAGGTAAGGCACAGCGACCTTTACTAAATCCCGAGAAGAGAACAGCTAACCACGGCTGTGGGAG TGGGCGACGGCCATCAGCAGAAAAGATTTCATGGAACGTGCTTGATCTCAAGGGAGATAATTACTTCTCCTGTGCTGTTGGTCGAACTCGCACAAATGCT CGCTATCTACTTGGATCATCAGATGATGTCGTGTCCTTCCTAATGAAATTAGCCAATGCATCTACGTGA
AA sequence Show only first row Show all	>Potri.011G103900.2 pacid=42781564 polypeptide=Potri.011G103900.2.p locus=Potri.011G103900 ID=Potri.011G103900.2.v4.1 annot-version=v4.1 MPGNQYNGNSTLNSGRVGRLLKIREQRRSIRSAYSNEVTDNHRGTEACENDLRTREGDSLNNSFIEQYLEGAIAEGYEKLDVRPLRQRLLVVANRLPVSA VRRGEDSWSLEISAGGLVTALLGVKEFEAKWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSF QSQFAAYKKANQMFADVVNQHYEEGDVVWCHDYHLMYLPKCLKEYNNNMKVGWFLHTPFPSSEIHRTLPSRSDLLRSVLAADLVGFHTYDYARHFVSACT RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALELPQVQEHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSAWRDKVVLLQIAVP TRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLGAGAI LVNPWNITEVADSIRQALTMSPEEREKRHRHNFVHVTTHTAQEWAETFVSELDDTVIEAQLRTKQVPPALPEEDAISRYLQSTNRLLILGFNATLTEPAD TPGRRADQIKEMELKLHPELKEALTALCSDRKTTIVVLSGSDRKTLDDNFGEYDMWLAAEHGMFLRLTKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTP RSHFERCETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGNRSVEVRAVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVY TFFEPELPSDSLAVARTKQNDGLKSPIDRRPSMKLPAIRSVSKSSQGKAQRPLLNPEKRTANHGCGSGRRPSAEKISWNVLDLKGDNYFSCAVGRTRTNA RYLLGSSDDVVSFLMKLANAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.011G103900 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032300 [exp]	2.00	0.9252
AT1G62810			Copper amine oxidase family pr...		Potri.001G118200 [exp]	2.82	0.9101
AT2G46980			unknown protein		Potri.002G186200 [exp]	3.16	0.9193
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	4.24	0.9276
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231700 [exp]	6.00	0.9101
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.005G222300 [exp]	8.94	0.9089
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072816 [exp]	9.89	0.9004
AT4G27290			S-locus lectin protein kinase ...		Potri.001G409300 [exp]	10.39	0.9182
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	11.48	0.8886
AT1G56145			Leucine-rich repeat transmembr...		Potri.003G148000 [exp]	12.00	0.8926

Compare expression of checked genes

Potri.011G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.