Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 381 / 6e-123 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 127 / 2e-30 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G383800 [exp] 1273 / 0 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 386 / 3e-125 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 373 / 1e-119 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 377 / 2e-119 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 373 / 3e-118 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 326 / 9e-101 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 318 / 5e-97 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 305 / 6e-92 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.012G059200 [exp] 140 / 2e-34 AT1G18560 953 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 972 / 0 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10032337 [exp] 382 / 1e-118 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10030063 [exp] 57 / 3e-08 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1) Lus10022109 [exp] 50 / 3e-07 ND / Lus10000359 [exp] 40 / 0.0005 ND 35 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0361 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.011G104000.3 pacid=42781367 polypeptide=Potri.011G104032.1.p locus=Potri.011G104000 ID=Potri.011G104000.3.v4.1 annot-version=v4.1 ATGGAAGTATCAAATGAATCAGCTATTAAGAAACCAAAGAGGTTGACGTCTGTCGTATGGAATCACTTCCAAAGGATTAGGAAGGCAGATGTATGCTATG CTGTTTGTGTGCATTGTGACAAGAAACTCAGTGGGTCAAGTAATAGTGGGACTACGCATCTGAGAAATCACTTAATGAGATGTCTTAAAAGATCTAATTA TGATGTGTCGCAACTACTTGCAGCAAAGAAAAAGAAGAAGGATACTTCCCTTAGCATTGCAAATGTCAATGCCAACTATGATGAAACACAAAGAAAAGAT GAATATATTAAGCCCTCAATTATAAAGTTCGATCATGAACAGAGAAAAGATGAAATTATTAGCCTTGGAAGTTGTAGGTTTGATCAAGAACAGAGTCGTC TGGATCTTGCCCGAATGATCATATTGCATGGTTACCCGTTAACCATGGTTGAGCATGTTGGATTCAAAATATTTGTGAAGAATCTTCAGCCTTTGTTTGA GTTTGTGCCAAATAGCTCCATTGAAGTCTCTTGTATTGAGATTTATATGAAAGAGAAACAGAAAGTGTATGAGATGATAAATAGATTGCATGGCAGAATT AACCTTGCTGTTGAAATGTGGTCTTCTCCAGAAAATGCTGAATACTTGTGTTTGATAGCGCACTATATTGATGAGGACTGGAAATTACAACAGAAAATTC TAAATTTTGTGACCTTGGATTCTTCTCATACTGAAGATATGCTTTCAGAAGTGATTATAAATTGTCTCATGGAATGGGATGTTGAATGCAAGTTATTTGC CATGACATTTGATGATTGTTTTGCTGATGATGATATTGTGCTCAGAATTAAGGATCGGATCTCACAAAACAGGCCCCTTTTGAGTAATGGTCAATTATTT GATGTTCGCTCTGCTGCGCATGTTCTAAATTTGATTGTTCAAGATGCCATGGAAACAATCCGAGAGGTGACTGAAAAGGTACGAGGAAGTGTTCGATATG TTAAAAGTTCGCAGGTAATACAAGGAAAGTTCAATGAAATTGCAGAGCAAATTGGAATCAGTAGTCAGAAGAATTTGGTTCTTGATTTGCCAACTCGGTG GAACTCAACATACTTCATGCTCGAAACAGTCATAGGATACAAGAGTGCATTTTGTTTCTTGCAAGAGCGTGATCCAGCCTATACCTCAGCTTTAACTGAT ACCGAGTGGGAATGGGCCAGTTCCATCACTGGTTATTTGAAACTCTTTGTTGAAATTACCAATATCTTTTCTGGGGATAAATGTCCAACAGCGAACATAT ATTTTCCTGAAATTTGTGATGTTCACATCCAGTTAATTGAATGGTGTAAGAACCCAGATGATTTTCTTAGTTCCATGGCATCGAAGATGAAAGCCAAGTT TGATAGATATTGGAGCAAGTGCAGTTTGGCTTTGGCAGTAGCAGCCATCTTAGATCCTCGATTCAAGATGAAATTGGTGGAGTATTATTATTCCCAGATC TATGGTAGTACTGCCCTGGATCGAATCAAGGAAGTTTCTGATGGCATTAAGGAGCTTTTTAATGCATACTCCATCTGCTCAACATTGGTCGATCAAGGTT CAACTTTACCTGGCAGCAGTTTACCTAGCACCAGTACTGATAGTAGGGATAGATTAAAGGGTTTTGACAAGTTCCTCCATGAATCTTCTCAAGGTCAGAG TGCAATATCTGATTTGGACAAATACTTGGAAGAACCGGTCTTTCCTCGCAATTGCGATTTCAACATATTAAACTGGTGGAAAGTCCACACACCTAGGTAC CCTATATTGTCTATGATGGCACGAGACATTCTGGGGACTCCCATGTCAACTATTGCGCCAGAGTTGGCTTTTGGTGTTGGAGGTAGGGTGCTTGATAGTT ATCGCAGTTCCCTGAATCCAGACACTCGACAGGCTCTGATATGCACACGGGATTGGTTGCAGGTGGAATCAGAAGATCACAATCCATCTTCTGCTCTAGC GCTTTATGTTGAAGCGAATTAG
AA sequence Show only first row Show all	>Potri.011G104000.3 pacid=42781367 polypeptide=Potri.011G104032.1.p locus=Potri.011G104000 ID=Potri.011G104000.3.v4.1 annot-version=v4.1 MEVSNESAIKKPKRLTSVVWNHFQRIRKADVCYAVCVHCDKKLSGSSNSGTTHLRNHLMRCLKRSNYDVSQLLAAKKKKKDTSLSIANVNANYDETQRKD EYIKPSIIKFDHEQRKDEIISLGSCRFDQEQSRLDLARMIILHGYPLTMVEHVGFKIFVKNLQPLFEFVPNSSIEVSCIEIYMKEKQKVYEMINRLHGRI NLAVEMWSSPENAEYLCLIAHYIDEDWKLQQKILNFVTLDSSHTEDMLSEVIINCLMEWDVECKLFAMTFDDCFADDDIVLRIKDRISQNRPLLSNGQLF DVRSAAHVLNLIVQDAMETIREVTEKVRGSVRYVKSSQVIQGKFNEIAEQIGISSQKNLVLDLPTRWNSTYFMLETVIGYKSAFCFLQERDPAYTSALTD TEWEWASSITGYLKLFVEITNIFSGDKCPTANIYFPEICDVHIQLIEWCKNPDDFLSSMASKMKAKFDRYWSKCSLALAVAAILDPRFKMKLVEYYYSQI YGSTALDRIKEVSDGIKELFNAYSICSTLVDQGSTLPGSSLPSTSTDSRDRLKGFDKFLHESSQGQSAISDLDKYLEEPVFPRNCDFNILNWWKVHTPRY PILSMMARDILGTPMSTIAPELAFGVGGRVLDSYRSSLNPDTRQALICTRDWLQVESEDHNPSSALALYVEAN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G104000 [exp]	0	1
AT3G02700			NC domain-containing protein-r...		Potri.004G078700 [exp]	9.16	0.6629
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	14.49	0.5817
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	16.52	0.6104
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.001G127300 [exp]	24.00	0.5913
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	25.84	0.6238
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	30.44	0.6049
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	32.49	0.5208
AT1G28120			unknown protein		Potri.003G162600 [exp]	33.22	0.5996
AT3G14470			NB-ARC domain-containing disea...		Potri.017G144481 [exp]	34.42	0.6135
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.001G146100 [exp]	44.09	0.5729	Pt-TOM2.2

Compare expression of checked genes

Potri.011G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.