Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53490 503 / 0 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G383900 [exp] 562 / 0 AT1G53490 480 / 2e-172 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005260 [exp] 455 / 1e-162 AT1G53490 414 / 1e-146 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF14634 [poplar] [flax] zf-RING_5 zinc-RING finger domain
Representative CDS sequence Show only first row Show all	>Potri.011G104500.1 pacid=42780502 polypeptide=Potri.011G104500.1.p locus=Potri.011G104500 ID=Potri.011G104500.1.v4.1 annot-version=v4.1 ATGAGATGCAATTCATGCTGGCGAGAGTTGGAAGGGCGTGCTGTTTCTACTACTTGTGGTCACCTCTTATGCACTGAAGATGCAAACAAGATCCTTAATA ATGATGCGGCCTGTCCAATCTGTGATCAAGTGCTCTCTAAGAGCCTTATGAAACCTGTGGAGATCAATCCAAATGATGAGTGGATAAATATGGCCATGGC TGGAATATCTCCACAGATATTGATGAAAAGTGCATACAGAAGCGTGATGTTTTTTACTGGGCAAAGGGAACTTGAGATGCAATACAAGATGAATAGAATT GTAGCTCAGTGCCGGCAAAAATGTGAGTCCATGCAAGAAAAGTTCACGGAAAAACTCGAGCAGCTGCATGCTGCATATCAGAAAATGGCCAAAAGGTGCC AGATGATGGAACAAGAGATTGAGAGCTTGTCAAAGGATAAACAAGAGCTCCAGGAGAAATTTTCTGAGAAAGCCAGGCAGAAGAGGAAACTTGATGAAAT GTATGATCAGTTGAGGAGCGAGTACGAGTCAAATAAAAGATCAGCCATCCAACCAGCAAACAATTTCTTTTCAAGAAATGAGCCTGATTTGTTCTCAAAC CCTGCAGCTACCATGATGGATAACAGAGACCCTATCCGTAAAGATTGGACGGTTTTCACTCCATCAACTCCAGGGCCTCGGGAGGATATATGGCCGGCAA GACAAAACAGCTCGAATTCTGGTCCCTTTGAAATCCGTGGTGGCTCACCAGCAAACCAAGCAGCCATGCCAGTTGATGTTGGAAATAGAAGAATTGGCTC TGTTCCTTCCTTTGGAGCTGGCTCTGGCAACCCCTCAATGACGCTAAGGAACTTGATACTTTCCCCGATAAAGCGCCCTCAACTTTCACGTAGCCGCCCT CAGATGTTCACGCTGTAG
AA sequence Show only first row Show all	>Potri.011G104500.1 pacid=42780502 polypeptide=Potri.011G104500.1.p locus=Potri.011G104500 ID=Potri.011G104500.1.v4.1 annot-version=v4.1 MRCNSCWRELEGRAVSTTCGHLLCTEDANKILNNDAACPICDQVLSKSLMKPVEINPNDEWINMAMAGISPQILMKSAYRSVMFFTGQRELEMQYKMNRI VAQCRQKCESMQEKFTEKLEQLHAAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKARQKRKLDEMYDQLRSEYESNKRSAIQPANNFFSRNEPDLFSN PAATMMDNRDPIRKDWTVFTPSTPGPREDIWPARQNSSNSGPFEIRGGSPANQAAMPVDVGNRRIGSVPSFGAGSGNPSMTLRNLILSPIKRPQLSRSRP QMFTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53490			RING/U-box superfamily protein...		Potri.011G104500 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Potri.003G207852 [exp]	31.63	0.8719
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	47.91	0.8978
AT5G14090			unknown protein		Potri.003G168700 [exp]	51.96	0.8965
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	53.44	0.8951
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468800 [exp]	64.80	0.8917
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	83.78	0.8911
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.012G037200 [exp]	89.79	0.8882
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.011G115400 [exp]	93.46	0.8747
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026860 [exp]	113.36	0.8777
					Potri.008G210250 [exp]	120.23	0.8795

Compare expression of checked genes

Potri.011G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.