Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15080 419 / 1e-128 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 408 / 2e-125 AtRLP34 receptor like protein 34 (.1) AT3G11080 405 / 5e-124 AtRLP35 receptor like protein 35 (.1) AT4G13920 384 / 1e-116 AtRLP50 receptor like protein 50 (.1) AT5G27060 385 / 4e-116 AtRLP53 receptor like protein 53 (.1) AT1G71400 375 / 1e-113 AtRLP12 receptor like protein 12 (.1) AT3G25010 365 / 2e-109 AtRLP41 receptor like protein 41 (.1) AT3G05650 362 / 9e-109 AtRLP32 receptor like protein 32 (.1) AT2G33060 360 / 1e-108 AtRLP27 receptor like protein 27 (.1) AT3G05660 357 / 1e-106 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105150 [exp] 953 / 0 AT1G45616 405 / 3e-125 receptor like protein 6 (.1) Potri.011G104900 [exp] 881 / 0 AT1G71400 362 / 2e-111 receptor like protein 12 (.1) Potri.012G027600 [exp] 730 / 0 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.012G009200 [exp] 676 / 0 AT1G45616 386 / 7e-118 receptor like protein 6 (.1) Potri.012G028101 [exp] 667 / 0 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.009G112061 [exp] 652 / 0 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.012G025400 [exp] 652 / 0 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.T125004 [exp] 649 / 0 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.012G010445 [exp] 647 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 380 / 1e-113 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 368 / 6e-109 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 356 / 2e-104 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10036251 [exp] 350 / 3e-101 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10006825 [exp] 334 / 7e-97 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10032335 [exp] 320 / 3e-93 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 317 / 3e-92 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003387 [exp] 315 / 5e-90 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10004310 [exp] 307 / 5e-89 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10027688 [exp] 308 / 2e-88 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G104600.1 pacid=42780319 polypeptide=Potri.011G104600.1.p locus=Potri.011G104600 ID=Potri.011G104600.1.v4.1 annot-version=v4.1 ATGATGGGATCTTCATTGTTGCTCGCTCAATTTCTCTGCCTCCTTTTCTTCCATTCGCACTCCCAACCTGCTCATTCTTCTTCCAATTTCTCCTCTTCAG TAAAATTATGCCCCGGTGACCAGAGCCTGGCTTTACTCCAATTCAAACATTCCTTTCCCATGACGCCTTCTTCTCCACATGGATTTTCATGTTATCCACC CAAGAAAGTGCTGTGGAAAGAGGGTACAGATTGCTGCTCTTGGGATGGCGTGACATGCAACATGCAAACTGGCCATGTAATTGGCCTAGACCTTGGTTGC AGCATGCTTTATGGCACCCTCCATTCTAACAGCACTCTCTTCTCCCTTCATCATCTTCAGAAGCTCGATCTCTCTCGCAATGACTTCAATCGCTCTGTTA TTTCATCTTCCTTTGGTCAGTTCTTGCATTTGACGCATTTAAATCTAGATTCATCGAATTTTGCAGGCCAAGTTCCCCCAGAAATCTCCCATTTATCCAG ATTGGTGTCACTTGATCTCTCTTCCAACTCTGAGGAGCTGATGCTGGAACCGATTTCTTTCAACAAGCTTGCTCAGAACCTTACCCAGCTGAGAGAACTC TACTTGGATGGAGTGAACATGTCTTTCGTGGTACCCAGTTCCTTGATGAACTTGTCTTTTTCTTTGTCATCTCTCCGACTCTGGTATTGTGGATTGCAAG GGGAACTCCCTGATAATTTCTTTCGCCGATCAAACCTTCAATCGCTCGATTTATCGAGCAACGAAGGACTCACTGGCTCTTTTCCGCCATACAATTTGAG CAATGCTATTTCGCATTTGGCTCTGTCAGAGACGCGGATTTCAATACATTTGGAACCACATTCAATCAGTCAACTGAAGTCTGTGGAAGTGATGTATCTT AATTGGTGCAATTTTGTTGGCTCGAATCTTGGTCTACTTGGTAATCTCACTCAACTAATTGAGTTGGCACTTGAAGGTAACCAGTTGGGTGGTCAAATCC CTTTCTCGTTTGGAAAACTTAAGCAACTCGAGTACTTGGATCTTAAATTCAATAATTTTATTGGTCCAATACCTGATGTTTTTGTTAATCAAACGCAATT GACGTCGTTGGAGCTCTCGTATAACAGTTTTCAAGGTCATCTTCCATTCTCACTTATAAACCTTAAGAAGCTAGATTCCTTGACACTGTCTTCCAATAAT TTTTCTGGTAAAATTCCATATGGTTTTTTTAACCTCACACAGCTCACTTCGTTAGACCTCTCATATAACAGTTTTCAAGGTCATCTTCCATTGTCACTTA GAAACCTTAAGAAGCTAGATTCCTTGACACTGTCTTCCAATAATTTTTCTGGTAAAATTCCATATGGTTTTTTTAACCTCACACAGCTCACTTCGTTAGA CCTCTCATATAACAGTTTTCAAGGTCATCTTCCATTGTCACTTAGAAACCTTAAGAAGCTAGATTCCTTGACACTGTCTTCCAATAATTTTTCTGGTAAA ATTCCATATGGTTTTTTTAACCTCACACAGCTCACTTCGTTAGACCTCTCATATAACAGTTTTCAAGGTCATCTTCCATTGTCACTTAGAAACCTTAAGA AGCTAGATTTCTTGACACTGTCTTCCAATAATTTTTCTGGTAAAATTCCATATGGTTTTTTTAACCTCACACAGCTCCTTTGGTTGGACCTCTCAAACAA CAGGTTTGATGGTCAAATTCCGGATGGTTTTTTTAACCTCACACAGCTCTTTTCGTTGGACCTCTCAAACAACAGGTTTGATGGTCAAATTCCGGATGGT TTTTTTAACCTCACACAGCTCACTTCGTTGGACCTCTCAAACAACAAGATTGATGGTCAGATTCCATCCTCATTTGGAAACCTTAAAAAGCTATATTTCT TGAAACTTTCTTCCAATAATTTTTCTAGTAAAATTCCATATGGTTTTTTTAACCTCACACAGCTCCCTTTGTTGGACCTCTCAAACAACAGGTTTGATGG TCAAATTCCTGATGGTTTTTTTAACCTCACACAGCTCACTTCGTTGGACCTCTCAAACAACAGGTTTGATGGTCAAATTCCGGATGGTTTTTTTAACCTC ACACGGCTCACTTCGTTGGACCTCTCAAACAATATACTGATAGGAAGTATCCCATCACAAATAAGTAGGCTTTCAGGTTTAAACTCTCTCGACTTATCTC ATAACTTGCTCGATGGAACAATTCCATCCTCCTTGTTTTCTATGCCTTCTTTGCGGGCTCTCCTTCTTCACAATAACCTACTGTATGGCCAGATAAGTCC GTTCCTTTGCAATTCATTACAATATATCGATTTCAGTCATAATAGGTTGTATGGCCAGATTCCACCTTCAGTTTTCAAGCTTGAGCATTTGAGAGCTCTT ATGCTTTCCTCCAATTATAAACTGACCGGGAACATCTCCTCTGTCATTTGTGAGCTGAAGTTCCTAGAGATTCTAGACTTGTCCAACAATAGCTTTAGTG GATTCATCCCACAATGCTTGGGAAACTTCAGTGATGGACTCTTAGTGTTGCATCTTGGTGGCAACAATCTCCATGGCAATATCCCTTCAATCTATTCAGA GGGGAACGATTTGAGATATCTCAACTTCAATGGCAACCAATTGAAAGGGGTGATACCACCATCCATCATCAATTGTGTGAATTTAGAATTTCTGGATCTC GGTAACAACATGATTGATGACACATTCCCTTCCTTTTTAGAAATGCTTCCACAGTTGGAGGTTGTTATTCTAAGGTCAAATAAATTCCATGGTTCTTTTA AGGGTCCAACTGTCAAGGACTCTTTTTCTAAATTACAGATTTTTGACCTCTCCAACAACAGCTTGAGTGGTCCGTTGCCAACAGAGTATTTCAACAACTT CAAAGCCATGATGAGCGTTGATCAGGATATGGATTACATGAGGCCAAAAAATAAAAATATATCTACTTCTTATGTTTATTCTGTAACTTTGGCATGGAAA GGTTCGGAGATTGAGTTTTCTAAAATTCAAATTGCCCTCGCAACACTTGATTTATCCTGCAATAAATTCACGGGAAAGATTCCAGAGTCCCTCGGGAAGC TTAAATCTCTGATACAGCTCAACCTTTCTCACAACAGCCTCATCGGTTATATCCAGCCATCACTTGGGAATTTAACTAATCTGGAATCGCTGGATCTCTC CTCAAATCTGCTTGCTGGAAGGATTCCTCAACAACTGGTAGATTTAACATTTCTTCAAGTCCTCAACCTTTCGTATAACCAACTTGAGGGACCCATACCT GTAGGTAAGCAGTTCAACACATTTGAAATTGGTTCATACGAAGGGAACTTGGGATTATGTGGACTTCCCTTGCAAGTAAAATGCAACGAAGGTGAGGGGC AACAACCGCCACCATCAAACTTCGAGAAAGAAGATTCAATGTTTGAAGAAGGATTTGGATGGAAAGCTGTAGCAATGGGTTATGGATGTGGATTTGTATT TGGAGTCTCTATAGGATACGTTGTATTTAGAGCAAGAAAACCTGCATGGTTTGTGAAGATGGTTGAAGCCAGTGCCCATCAATATGGAAAAAGGCTTAGA AGGAAGAATGCTCCGGCCAGAAATGGTGGAAGACGACACTAG
AA sequence Show only first row Show all	>Potri.011G104600.1 pacid=42780319 polypeptide=Potri.011G104600.1.p locus=Potri.011G104600 ID=Potri.011G104600.1.v4.1 annot-version=v4.1 MMGSSLLLAQFLCLLFFHSHSQPAHSSSNFSSSVKLCPGDQSLALLQFKHSFPMTPSSPHGFSCYPPKKVLWKEGTDCCSWDGVTCNMQTGHVIGLDLGC SMLYGTLHSNSTLFSLHHLQKLDLSRNDFNRSVISSSFGQFLHLTHLNLDSSNFAGQVPPEISHLSRLVSLDLSSNSEELMLEPISFNKLAQNLTQLREL YLDGVNMSFVVPSSLMNLSFSLSSLRLWYCGLQGELPDNFFRRSNLQSLDLSSNEGLTGSFPPYNLSNAISHLALSETRISIHLEPHSISQLKSVEVMYL NWCNFVGSNLGLLGNLTQLIELALEGNQLGGQIPFSFGKLKQLEYLDLKFNNFIGPIPDVFVNQTQLTSLELSYNSFQGHLPFSLINLKKLDSLTLSSNN FSGKIPYGFFNLTQLTSLDLSYNSFQGHLPLSLRNLKKLDSLTLSSNNFSGKIPYGFFNLTQLTSLDLSYNSFQGHLPLSLRNLKKLDSLTLSSNNFSGK IPYGFFNLTQLTSLDLSYNSFQGHLPLSLRNLKKLDFLTLSSNNFSGKIPYGFFNLTQLLWLDLSNNRFDGQIPDGFFNLTQLFSLDLSNNRFDGQIPDG FFNLTQLTSLDLSNNKIDGQIPSSFGNLKKLYFLKLSSNNFSSKIPYGFFNLTQLPLLDLSNNRFDGQIPDGFFNLTQLTSLDLSNNRFDGQIPDGFFNL TRLTSLDLSNNILIGSIPSQISRLSGLNSLDLSHNLLDGTIPSSLFSMPSLRALLLHNNLLYGQISPFLCNSLQYIDFSHNRLYGQIPPSVFKLEHLRAL MLSSNYKLTGNISSVICELKFLEILDLSNNSFSGFIPQCLGNFSDGLLVLHLGGNNLHGNIPSIYSEGNDLRYLNFNGNQLKGVIPPSIINCVNLEFLDL GNNMIDDTFPSFLEMLPQLEVVILRSNKFHGSFKGPTVKDSFSKLQIFDLSNNSLSGPLPTEYFNNFKAMMSVDQDMDYMRPKNKNISTSYVYSVTLAWK GSEIEFSKIQIALATLDLSCNKFTGKIPESLGKLKSLIQLNLSHNSLIGYIQPSLGNLTNLESLDLSSNLLAGRIPQQLVDLTFLQVLNLSYNQLEGPIP VGKQFNTFEIGSYEGNLGLCGLPLQVKCNEGEGQQPPPSNFEKEDSMFEEGFGWKAVAMGYGCGFVFGVSIGYVVFRARKPAWFVKMVEASAHQYGKRLR RKNAPARNGGRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	0	1
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	2.44	0.9108
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	3.46	0.9141
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	4.47	0.8623
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	5.00	0.9131
					Potri.007G089400 [exp]	5.91	0.8995
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	6.92	0.8942
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	7.54	0.8680
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	9.48	0.8765
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	10.39	0.8782
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	11.95	0.8818

Compare expression of checked genes

Potri.011G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.