Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40170 209 / 7e-62 AtRLP54 receptor like protein 54 (.1) AT2G32660 196 / 4e-58 AtRLP22 receptor like protein 22 (.1) AT3G05660 198 / 1e-57 AtRLP33 receptor like protein 33 (.1) AT4G13810 196 / 2e-57 AtRLP47 receptor like protein 47 (.1.2) AT4G13920 195 / 2e-56 AtRLP50 receptor like protein 50 (.1) AT3G25020 195 / 2e-56 AtRLP42 receptor like protein 42 (.1) AT2G33050 194 / 2e-56 AtRLP26 receptor like protein 26 (.1) AT2G33060 194 / 2e-56 AtRLP27 receptor like protein 27 (.1) AT1G45616 194 / 9e-56 AtRLP6 receptor like protein 6 (.1) AT1G71400 192 / 1e-55 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104900 [exp] 564 / 0 AT1G71400 362 / 2e-111 receptor like protein 12 (.1) Potri.011G105150 [exp] 521 / 2e-179 AT1G45616 405 / 3e-125 receptor like protein 6 (.1) Potri.011G104600 [exp] 523 / 6e-178 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.012G016715 [exp] 369 / 8e-128 AT2G33060 247 / 1e-74 receptor like protein 27 (.1) Potri.009G112061 [exp] 387 / 5e-127 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.T125004 [exp] 380 / 2e-124 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.012G021940 [exp] 360 / 2e-124 AT2G33060 229 / 6e-68 receptor like protein 27 (.1) Potri.012G028101 [exp] 376 / 5e-123 AT3G11080 400 / 1e-123 receptor like protein 35 (.1) Potri.012G008300 [exp] 370 / 1e-122 AT2G33060 332 / 5e-101 receptor like protein 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002214 [exp] 191 / 8e-57 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10032335 [exp] 185 / 6e-53 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003387 [exp] 185 / 1e-52 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10026415 [exp] 184 / 3e-52 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10024721 [exp] 182 / 5e-52 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011064 [exp] 181 / 3e-51 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10042239 [exp] 180 / 7e-51 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 177 / 7e-50 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10011039 [exp] 175 / 5e-49 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10016402 [exp] 165 / 4e-46 AT1G47890 313 / 4e-94 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G104700.2 pacid=42781877 polypeptide=Potri.011G104700.2.p locus=Potri.011G104700 ID=Potri.011G104700.2.v4.1 annot-version=v4.1 ATGATTGATGACACATTCCCTTCCTTTTTAGAAACGCTTCCAAAGTTGAAGGTTGTTATTCTAAGGTCAAATAAACTCCGTGGTTCTTTGAAGGGTCCGA CTGTCAAGGACTCTTTTTCTAAATTACAGATTTTTGACCTTTCCAACAACAGCCTGAGTGGTCCTTTGCCAACAGAGTATTTCAACAACTTCAAAGCCAT GATGAGCATTGATCAGGATATGGATTACATGAGGACAAAAAATGTATCTACTACTTATGTTTATTCTGTACAATTGGCATGGAAAGGTTCGAAGACTCTG TTTCCTAAAATTCAAATTGCGCTCACGACACTTGATTTATCATGCAATAAATTCACGGGAAAGATTCCAGAGTCACTCGGGAAGCTTAAATCTCTGAAAC AGCTCAACCTTTCTCACAACAGCCTCATTGGTTGTATCCAGCCGTCAATGGGGAATTTAACTAATCTGGAGTGGTTGGATCTCTCTTCAAATCTGCTTGC TGGAAGGATTCCTCAGGAATTGGTAGATTTAACATTTCTTCAAGTCCTGAACCTTTCGTATAACCAACTTGAGGGACCCATACCTCAAGGTAAGCAGTTC AATACATTTGAAAATGGTTCATACGAAGGGAACTTGGGATTATGTGGGTTTCCCTTGCAAGTAAAATGCAACAAAGGCGAGGGGCAACAACCGCCACCGT CAAACTTCGAGAAACAAGGTTCAATGTTTGAAGAGGGATTTGGATGGAAAGCTGTAACAATGGGTTATGGATGTGGATTTGTATTTGGAGTCTCTATAGG ATATGTTGTATTTAGAGCAAGAAAAGCTGCATGGTTTGTGAAAATGGTTGAAGACACAGTCAAGAAGAGGGGATCATCTTCCAGGCTGGTGTAG
AA sequence Show only first row Show all	>Potri.011G104700.2 pacid=42781877 polypeptide=Potri.011G104700.2.p locus=Potri.011G104700 ID=Potri.011G104700.2.v4.1 annot-version=v4.1 MIDDTFPSFLETLPKLKVVILRSNKLRGSLKGPTVKDSFSKLQIFDLSNNSLSGPLPTEYFNNFKAMMSIDQDMDYMRTKNVSTTYVYSVQLAWKGSKTL FPKIQIALTTLDLSCNKFTGKIPESLGKLKSLKQLNLSHNSLIGCIQPSMGNLTNLEWLDLSSNLLAGRIPQELVDLTFLQVLNLSYNQLEGPIPQGKQF NTFENGSYEGNLGLCGFPLQVKCNKGEGQQPPPSNFEKQGSMFEEGFGWKAVTMGYGCGFVFGVSIGYVVFRARKAAWFVKMVEDTVKKRGSSSRLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40170		AtRLP54	receptor like protein 54 (.1)		Potri.011G104700 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G105150 [exp]	2.44	0.8602
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	4.24	0.8242	Pt-PSCLRR52.52
					Potri.005G099266 [exp]	4.47	0.8414
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	15.09	0.8391
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	15.32	0.8410
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	21.49	0.8369
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.010G177100 [exp]	27.92	0.8232	AS2.1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	28.00	0.8263	IAA14.1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.006G022300 [exp]	29.69	0.7721
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.018G033400 [exp]	30.41	0.7778	2OGox9

Compare expression of checked genes

Potri.011G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.