Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSCLRR52.52
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71400 362 / 2e-111 AtRLP12 receptor like protein 12 (.1) AT4G13920 353 / 8e-108 AtRLP50 receptor like protein 50 (.1) AT3G05660 351 / 4e-107 AtRLP33 receptor like protein 33 (.1) AT3G11010 351 / 6e-107 AtRLP34 receptor like protein 34 (.1) AT1G71390 324 / 5e-98 AtRLP11 receptor like protein 11 (.1) AT3G05370 324 / 2e-97 AtRLP31 receptor like protein 31 (.1) AT1G47890 326 / 1e-96 AtRLP7 receptor like protein 7 (.1) AT3G11080 324 / 2e-96 AtRLP35 receptor like protein 35 (.1) AT5G27060 320 / 7e-95 AtRLP53 receptor like protein 53 (.1) AT3G05650 312 / 9e-93 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104600 [exp] 901 / 0 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.011G105150 [exp] 887 / 0 AT1G45616 405 / 3e-125 receptor like protein 6 (.1) Potri.011G055000 [exp] 846 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.012G026000 [exp] 841 / 0 AT1G45616 383 / 3e-118 receptor like protein 6 (.1) Potri.012G008300 [exp] 789 / 0 AT2G33060 332 / 5e-101 receptor like protein 27 (.1) Potri.012G030125 [exp] 788 / 0 AT2G33060 330 / 2e-100 receptor like protein 27 (.1) Potri.012G027400 [exp] 768 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G020600 [exp] 758 / 0 AT3G05660 372 / 2e-115 receptor like protein 33 (.1) Potri.012G008911 [exp] 750 / 0 AT3G05650 303 / 5e-89 receptor like protein 32 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024721 [exp] 332 / 6e-100 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 327 / 2e-98 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 303 / 3e-88 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003389 [exp] 297 / 6e-86 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10004313 [exp] 289 / 5e-85 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10011039 [exp] 293 / 5e-83 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10011064 [exp] 278 / 3e-79 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10026415 [exp] 269 / 5e-76 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 268 / 1e-75 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10002214 [exp] 247 / 4e-72 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G104900.1 pacid=42781311 polypeptide=Potri.011G104900.1.p locus=Potri.011G104900 ID=Potri.011G104900.1.v4.1 annot-version=v4.1 ATGATGGGATCTTCATTGTTGCTCGCTCAATTTCTCTGCCTCCTTCTCTTCCATTCGCACTCCCAACCTGCTCATTCTTCTTCCAATTTCTCCTCTTCAG TACAATTATGCCCCCGTGACCAGAGCCTGGCTTTGCTCCAATTCAAAAATTCCTTTCCCATGCCTTCTTCTCCATCTACATTTCCATGTTATCCACCCGA GAAAGTGCTGTGGAAAGAGGGTACAGATTGCTGCACTTGGGATGGCGTGACATGCAACATGAAAACTGGCCATGTAATTGGCCTAGACCTTGGTTGCAGC ATGCTTTATGGCACCCTCCATTCTAACAGCACTCTCTTCTCCCTTCATCATCTTCAGAAGCTCGATCTCTCCCGCAATGACTTCAATCGCTCTGTCATTT CATCTTCCTTTGGCCAGTTCTTGCATTTGACGCATTTAAATCTAAATTCATCGAATTTTGCAGGCCAAGTTCCCCCAGAAATCTCCCATTTATCCAGATT GGTGTCACTTGATCTCTCTTCCAACTCTGAGGAGCTGATGCTGGAACCGATTTCTTTCAACAAGCTTGCTCAGAACCTTACCCAGCTAAGAGAACTCTAC TTGGGTGGAGTGAACATGTCTTTAGTGGTACCCAGTTCCTTGATGAACTTGTCTTCTTCTTTGTCAACTCTCCAACTCTGGCGTTGTGGATTGAAAGGGG AACTCCCTGATAATTTATTTCGCCGATCAAACCTTCAATGGCTCGATTTATGGAGCAACGAAGGACTCACTGGCTCTTTTCCGCAATACAATTTGAGCAA TGCTCTTTCGCATTTGGATCTGTCATACACGCGGATCTCAATTCATTTGGAACCAGATTCAATCAGTCATCTGAAGTCTGTGGAGGAGATGTATCTTAGT GGGTGCAATTTTGTTGGCTCGAATCTGGATCTACTTGGTAACCTCACTCAACTCATTGAGTTGGGCCTTAAAGATAACCAGTTGGGTGGTCAAATCCCTT TCTCATTGGGAAAACTTAAGCAACTCAAGTACTTGCATCTTGGAAACAATAGTTTTATTGGTCCAATTCCGGATAGTTTGGTTAAACTCACACAGCTTGA GTGGTTGGACCTCTCGTACAATAGGCTAATAGGTCAGATCCCTTTTCAAATAAGCAGGCTTTCAAGTCTTACTGCACTACTTTTATCTAATAATCAACTG ATAGGACCCATCCCATCACAAATAAGTAGGCTTTCAGGTTTAATCATTCTCGACTTATCTCATAACTTGCTCAATGGAACAATTCCATCCTCCTTGTTTT CCATGCCTTCATTGCATTTTCTTCTTTTGAACAATAACCTATTGTATGGCCAGATAAGTCCGTTCCTTTGTAAGTCATTACAATATATCAATCTTAGTTT CAACAAGTTGTATGGCCAGATTCCACCTTCAGTTTTCAAGCTTGAACATTTGAGACTTCTTAGGCTTTCCTCCAATGATAAACTGACTGGGAACATCTCT TCCGTCATTTGCGAGCTGAAGTTCTTAGAGATTCTAGACTTGTCCAACAATGGCTTTAGTGGATTCATCCCACAATGCTTGGGAAACTTCAGCGATGGAC TCTTAGTGTTGCATCTTGGTGGCAACAATCTCCATGGTAATATCCCTTCAATCTATTCAGAGGGGAACGATTTGAGATATCTCAACTTCAATGGCAACCA ATTGAATGGGGTGATACCATCATCCATCATCAATTGTGTGAATTTAGAATTTCTGGATCTTGGTAACAATATGATTGATGACACATTCCCTTCCTTTCTA GAAACGCTTCCAAAATTGAAGGTTGTTATTCTAAGGTCAAATAAACTCCATGGTTCTTTGAAGGGTCCAACTGTCAAGGACTCTTTTTCTAAATTACAGA TTTTTGACCTTTCCAACAACAGCCTGAGTGGTCCTTTGCCAACAGAGTATTTCAACAACTTCAAAGCCATGATGAGCATTGATCAGGATATGGATTACAT GAGGACAAAAAATGTATCTACTACTTATGTTTTTTCTGTACAATTGGCATGGAAAGGTTCGAAGACTGTGTTTCCTAAAATTCAAATTGCGCTCACGACA CTTGATTTATCCTGCAATAAATTCACGGGAAAGATTCCAGAGTCCCTCGGGAAGCTTAAATCTCTGAAACAGCTCAACCTTTCTCACAACAGCCTCATTG GTTTTATCCAGCCGTCATTGGGGAATTTAACTAATCTGGAGTCGTTGGATCTCTCTTCAAATCTGCTTGCTGGAAGGATTCCTCAGGAATTGGTAGATTT AACATTTCTTCAAGTCCTGAACCTTTCGTATAACCAACTTGAGGGACCCATACCTCTAGGTAAGCAGTTCAATACATTTGAAAATGGTTCATACGAAGGG AACTTGGGATTATGTGGGTTTCCCTTGCAAGTAAAATGCAACAAAGGCGAGGGGCAACAACCGCCTCCGTCAAACTTCGAGAAAGAAGATTCAATGTTTG AAGAGGGATTTGGATGGAAAGCTGTAACAATGGGTTATGGATGTGGATTTGTATTTGGAGTCTCTATAGGATATGTTGTATTTAGAGCAAGAAAAGCTGC ATGGTTTGTGAATATGGTTGAAGACAGTGCCCATCAATATGGAAAAAGGCTTAGAAGGAAGAATGCTCCCAGAAATGGAGGAAGACGATACTAG
AA sequence Show only first row Show all	>Potri.011G104900.1 pacid=42781311 polypeptide=Potri.011G104900.1.p locus=Potri.011G104900 ID=Potri.011G104900.1.v4.1 annot-version=v4.1 MMGSSLLLAQFLCLLLFHSHSQPAHSSSNFSSSVQLCPRDQSLALLQFKNSFPMPSSPSTFPCYPPEKVLWKEGTDCCTWDGVTCNMKTGHVIGLDLGCS MLYGTLHSNSTLFSLHHLQKLDLSRNDFNRSVISSSFGQFLHLTHLNLNSSNFAGQVPPEISHLSRLVSLDLSSNSEELMLEPISFNKLAQNLTQLRELY LGGVNMSLVVPSSLMNLSSSLSTLQLWRCGLKGELPDNLFRRSNLQWLDLWSNEGLTGSFPQYNLSNALSHLDLSYTRISIHLEPDSISHLKSVEEMYLS GCNFVGSNLDLLGNLTQLIELGLKDNQLGGQIPFSLGKLKQLKYLHLGNNSFIGPIPDSLVKLTQLEWLDLSYNRLIGQIPFQISRLSSLTALLLSNNQL IGPIPSQISRLSGLIILDLSHNLLNGTIPSSLFSMPSLHFLLLNNNLLYGQISPFLCKSLQYINLSFNKLYGQIPPSVFKLEHLRLLRLSSNDKLTGNIS SVICELKFLEILDLSNNGFSGFIPQCLGNFSDGLLVLHLGGNNLHGNIPSIYSEGNDLRYLNFNGNQLNGVIPSSIINCVNLEFLDLGNNMIDDTFPSFL ETLPKLKVVILRSNKLHGSLKGPTVKDSFSKLQIFDLSNNSLSGPLPTEYFNNFKAMMSIDQDMDYMRTKNVSTTYVFSVQLAWKGSKTVFPKIQIALTT LDLSCNKFTGKIPESLGKLKSLKQLNLSHNSLIGFIQPSLGNLTNLESLDLSSNLLAGRIPQELVDLTFLQVLNLSYNQLEGPIPLGKQFNTFENGSYEG NLGLCGFPLQVKCNKGEGQQPPPSNFEKEDSMFEEGFGWKAVTMGYGCGFVFGVSIGYVVFRARKAAWFVNMVEDSAHQYGKRLRRKNAPRNGGRRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.011G104900 [exp]	0	1	Pt-PSCLRR52.52
AT5G57850			D-aminoacid aminotransferase-l...		Potri.018G039000 [exp]	2.23	0.8354
AT5G40170		AtRLP54	receptor like protein 54 (.1)		Potri.011G104700 [exp]	4.24	0.8242
AT3G14470			NB-ARC domain-containing disea...		Potri.014G012000 [exp]	6.00	0.8044
AT3G14260			Protein of unknown function (D...		Potri.003G072200 [exp]	9.21	0.7870
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	14.24	0.7849
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	15.58	0.7763
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	17.43	0.7814
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.001G265900 [exp]	23.62	0.7208
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	24.59	0.7705
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.008G049500 [exp]	27.49	0.7251

Compare expression of checked genes

Potri.011G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.