Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 405 / 5e-125 AtRLP7 receptor like protein 7 (.1) AT1G45616 405 / 5e-125 AtRLP6 receptor like protein 6 (.1) AT4G13920 389 / 5e-120 AtRLP50 receptor like protein 50 (.1) AT3G11080 379 / 8e-116 AtRLP35 receptor like protein 35 (.1) AT3G11010 360 / 2e-109 AtRLP34 receptor like protein 34 (.1) AT1G71400 350 / 6e-106 AtRLP12 receptor like protein 12 (.1) AT5G27060 347 / 6e-104 AtRLP53 receptor like protein 53 (.1) AT3G05660 343 / 2e-103 AtRLP33 receptor like protein 33 (.1) AT3G25010 342 / 5e-103 AtRLP41 receptor like protein 41 (.1) AT2G15080 345 / 6e-103 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104600 [exp] 993 / 0 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.011G104900 [exp] 907 / 0 AT1G71400 362 / 2e-111 receptor like protein 12 (.1) Potri.009G112061 [exp] 863 / 0 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.011G055000 [exp] 853 / 0 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.T125004 [exp] 823 / 0 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.012G014625 [exp] 802 / 0 AT3G05660 366 / 4e-112 receptor like protein 33 (.1) Potri.012G027400 [exp] 798 / 0 AT3G05660 347 / 3e-105 receptor like protein 33 (.1) Potri.012G010445 [exp] 796 / 0 AT3G28890 360 / 4e-111 receptor like protein 43 (.1.2) Potri.012G009200 [exp] 793 / 0 AT1G45616 386 / 7e-118 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026415 [exp] 368 / 9e-111 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 363 / 6e-109 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 360 / 7e-108 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 343 / 1e-101 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10003387 [exp] 339 / 2e-100 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10011064 [exp] 308 / 1e-89 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10032335 [exp] 298 / 5e-87 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 296 / 4e-86 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10004313 [exp] 293 / 1e-85 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10004310 [exp] 288 / 2e-83 AT2G33060 358 / 6e-111 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G105150.1 pacid=42780285 polypeptide=Potri.011G105150.1.p locus=Potri.011G105150 ID=Potri.011G105150.1.v4.1 annot-version=v4.1 ATGATGGGATCTTCATTGTTGCTCGCTCAATTTCTCTGCCTTCTTTTCTTCCATTCGCACTCCCAACCTACTCATTCTTCTTCCAATTTCTCCTCTTCAG TACAATTATGCCCCGGTGACCAGAGCCTGGCTTTGCTCCAATTCAAAAATTCCTTTCCCATGCCTTCTTCTCCATCTACACTTCCATGTTATCCACCCGA GAAAGTGCTGTGGAAAGAGGGTACAGATTGCTGCACTTGGGATGGCGTGACATGCAACATCAAAACTGGCCATGTAATTGGCCTAGACCTTGGTTGCAGC ATGCTTTATGGCACCCTCCATTCTAACAGCACTCTCTTCTCCCTTCATCATCTTCAGAAGCTTAATCTCTCTTACAATGACTTCAATCGCTCTGTCATTT CATCTTCCTTTGGTCAGTTCTTGCATTTGACGCATTTAAATCTAAATTCATCGAATTTTGCAGGCCAAGTTCCCCCAGAAATCTCCCATTTATCCAGATT GGTGTCCCTTGGTCTCTCTTCCAACTCTGGGGAGCTGATGCTGGAACCGATTTCTTTCAACAAGCTTGCTCAGAACCTGACCCAGCTGAGAGAACTCTAC TTGGGTGGAGTGAACATGTCTTTGGTGGTACCCAGTTCCTTGATGAACTTGTCTTCTTCTTTGTCATATCTCCAACTCTGGCGTTGTGGATTGAAAGGGG ATCTCCCTGATAATTTATTTCGCCGATCAAACCTTCAATGGCTCGATTTATGGAGCAACGAAGGACTCACTGGCTCTTTTCCGCAATACAATTTGAGCAA TGCTCTTTCGCATTTGGATCTGTCATACACGCGGATCTCAATTCATTTGGAACCAGATTCAATCAGTCATCTGAAGTCTGTGGAGAAGCTGTATCTTAGT GGGTGCAATTTTGTTGGCTCGAATCTGGATCTATTTGGTAACCTCACACAACTCATTGAGTTGGGACTTGCAGGTAACCAGTTTGGTGGTCAAATCCCTT TCTCGTTGGGAAAACTTAAGCAACTCGAGCACTTGGATCTCCGAAACAATAATTTTATTGGTCCAATTCCTGATATTTTTGTTAATCAAACCCAATTGGC GTGGTTGCGCCTCTCGGATAACAATTTTCAAGGTCATCTGCCATTCTCACTTAGAAACCTTAAGCAGCTCAGTCGCTTACAACTCTCAGCCAATAATTTT ACTTCCCAAATTCTGAATGAGTTTTCTAACCTCACTGAACTCACCGAGTTGGATCTCTCATATAACAAATTTGATGTTCAGATTCCATCCTTACTTGGAA ACCTTAAAAAACTAAATTCTTTGACACTTTCTTTTAATAAATTTTTTGGTAAAATTCCAGATAATTTTGCTAACCTCACACATCTCACTTGGTTAGACCT CTCTTACAATAGACTAACAGGCCTCCCTCATCAAATAAATAGGCTTACAGGTCTAACCACACTCTTTTTATCTAATAATCAACTGATAGGACACATCCCA TCACTATTAAGTAGGCTTTCAGATTTAAACATTCTCGACTTATCTCATAACTTTTTCAATGGAACAATTCCATCCTCCTTGTTTTGTATGCCTTCATTAC AGTTTCTTCTTCTGAACAATAACCTCTTGTATGGCCACATAAGTCCGTTCCTTTGTAATTCATTACAATATATCAATTTCAGTCATAACAAGTTGTATGG CCAGATTCCACCTTCAGTTTTGAAGCTTGAACATTTGAAAGTTCTTATGCTTTCCTCCAATGATAAACTGATTGGGAACATCTCTTCTGTCATTTGTGAG CTAAAGTTCCTAGAGATTCTAGACTTGTCCAACAGTGGCTTTAGTGGATTCATCCCACAATGCTTGGGAAACTTCAGTTATGGACTCTCAGTATTGCATC TTGGTGGCAACAATCTCCACGGCAATATCCCTTCAATCTATTCAGAGGGGAATAGTTTGAGATATCTCAACTTCAATGGCAACAAATTGAAAGGGGTGAT ACCACCATCCATCATCAATTGTGTGAATTTAGAATTTCTGGACCTTAGTAACAACATGATTGATGGCACATTCCCTTCCTTTTTAGAAACGCTTCCAAAG TTGAAGGTTGTTATTCTAAGGTCAAATAAACTGCATGGTTCTTTGAAGGGTCCAACTGTCAAGGATGCTTTTTCTAAATTGCAGATTTTTGACCTTTCCA ACAATAACCTGAGTGGTCCTTTGCCAACAGAGTATTTCAACAACTTCAAAGCCATAATGAGCGTTGATCAGGATATGGATTACATGAGGACACACAATTT ATCTACTACTTATGTTTATTCTGTAAAATTGGCATGGAAAGGTTTCGAGGTTGAGTTTTCTAAAATTCAAATTGCCCTCACAATACTTGATTTATCCTGC AATAAATTCACGGGAAAGATTCCAGAGTCCCTTGGGAAGCTTAAATCTCTGATACAGCTCAACCTTTCTCACAACAGCCTCATCGGTTATATCCAGCCAT CACTGGGGAATTTAACTAATCTGGAATCGCTGGATCTCTCCTCAAATTTGCTTGCTGGAAGGATTCCTCAACAATTGGTAGATTTAAAATATCTTCAAGT CCTCAACCTTTCATATAACCAACTTGAGGGACCCATACCTGTAGGTAAGCAGTTCAACACATTTGAAAATGGTTCTTACGAAGGGAACTTGGGATTATGT GGATTTCCCTTGCAAGTAAAATGCAACAAAGGTGAGGAGCAACAACCGCCACCATCAAACTTCGAGAAAGAAGATTCAATGTTTGGAGAGGGATTAGGAT GGAAAGCTGTAGCAATGGGTTATGGATGTGGATTTGTAGTTGGAGTCTCTATAGGATACGTTGTATTTAGAGCAAGAAAACCTGCATGGTTTGTGAAGAT GGTTGAAGACAGTGCACATCAAAATGCAAAAAGGCTTAGAAGGAAGAATGCTCCGGCCAGAAATGGTGGAAGACGACACTAG
AA sequence Show only first row Show all	>Potri.011G105150.1 pacid=42780285 polypeptide=Potri.011G105150.1.p locus=Potri.011G105150 ID=Potri.011G105150.1.v4.1 annot-version=v4.1 MMGSSLLLAQFLCLLFFHSHSQPTHSSSNFSSSVQLCPGDQSLALLQFKNSFPMPSSPSTLPCYPPEKVLWKEGTDCCTWDGVTCNIKTGHVIGLDLGCS MLYGTLHSNSTLFSLHHLQKLNLSYNDFNRSVISSSFGQFLHLTHLNLNSSNFAGQVPPEISHLSRLVSLGLSSNSGELMLEPISFNKLAQNLTQLRELY LGGVNMSLVVPSSLMNLSSSLSYLQLWRCGLKGDLPDNLFRRSNLQWLDLWSNEGLTGSFPQYNLSNALSHLDLSYTRISIHLEPDSISHLKSVEKLYLS GCNFVGSNLDLFGNLTQLIELGLAGNQFGGQIPFSLGKLKQLEHLDLRNNNFIGPIPDIFVNQTQLAWLRLSDNNFQGHLPFSLRNLKQLSRLQLSANNF TSQILNEFSNLTELTELDLSYNKFDVQIPSLLGNLKKLNSLTLSFNKFFGKIPDNFANLTHLTWLDLSYNRLTGLPHQINRLTGLTTLFLSNNQLIGHIP SLLSRLSDLNILDLSHNFFNGTIPSSLFCMPSLQFLLLNNNLLYGHISPFLCNSLQYINFSHNKLYGQIPPSVLKLEHLKVLMLSSNDKLIGNISSVICE LKFLEILDLSNSGFSGFIPQCLGNFSYGLSVLHLGGNNLHGNIPSIYSEGNSLRYLNFNGNKLKGVIPPSIINCVNLEFLDLSNNMIDGTFPSFLETLPK LKVVILRSNKLHGSLKGPTVKDAFSKLQIFDLSNNNLSGPLPTEYFNNFKAIMSVDQDMDYMRTHNLSTTYVYSVKLAWKGFEVEFSKIQIALTILDLSC NKFTGKIPESLGKLKSLIQLNLSHNSLIGYIQPSLGNLTNLESLDLSSNLLAGRIPQQLVDLKYLQVLNLSYNQLEGPIPVGKQFNTFENGSYEGNLGLC GFPLQVKCNKGEEQQPPPSNFEKEDSMFGEGLGWKAVAMGYGCGFVVGVSIGYVVFRARKPAWFVKMVEDSAHQNAKRLRRKNAPARNGGRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G105150 [exp]	0	1
AT5G40170		AtRLP54	receptor like protein 54 (.1)		Potri.011G104700 [exp]	2.44	0.8602
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	4.89	0.8537
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	14.42	0.8509
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	16.97	0.8413
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	19.39	0.8222
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	21.49	0.8471
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	22.44	0.8502
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	23.81	0.8391	Pt-PHOT1.1
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	25.21	0.8570	ATML1.2
AT5G33280			Voltage-gated chloride channel...		Potri.006G064000 [exp]	26.53	0.8077

Compare expression of checked genes

Potri.011G105150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.