Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78600 284 / 1e-95 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G06040 153 / 7e-46 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 146 / 1e-42 CO STH salt tolerance homologue (.1) AT4G10240 132 / 3e-38 CO B-box zinc finger family protein (.1) AT1G75540 135 / 2e-37 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 130 / 2e-36 CO B-box zinc finger family protein (.1) AT2G21320 100 / 7e-26 CO B-box zinc finger family protein (.1) AT4G38960 97 / 2e-24 CO B-box type zinc finger family protein (.1.2.3) AT5G15850 79 / 2e-16 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT3G02380 77 / 5e-16 CO ATCOL2, COL2 CONSTANS-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384000 [exp] 466 / 1e-167 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.007G130100 [exp] 154 / 1e-45 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.004G161000 [exp] 150 / 1e-44 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.017G028300 [exp] 149 / 2e-43 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.017G028301 [exp] 149 / 2e-43 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.005G234500 [exp] 144 / 4e-41 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.002G028200 [exp] 142 / 3e-40 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.009G122000 [exp] 129 / 2e-36 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.005G117100 [exp] 101 / 6e-26 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038147 [exp] 357 / 4e-124 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10042498 [exp] 355 / 1e-123 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10017495 [exp] 137 / 3e-39 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10027041 [exp] 138 / 4e-39 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10025579 [exp] 138 / 4e-39 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10028791 [exp] 137 / 5e-39 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10031087 [exp] 100 / 4e-25 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 100 / 5e-25 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 95 / 3e-23 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10020105 [exp] 75 / 5e-15 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.011G105400.1 pacid=42780794 polypeptide=Potri.011G105400.1.p locus=Potri.011G105400 ID=Potri.011G105400.1.v4.1 annot-version=v4.1 ATGAAGATACAGTGCAACGTCTGTGAGGCAGCGGAGGCGAAGGTGCTATGTTGTGCGGATGAGGCGGCGTTGTGTTGGACATGTGACGAGAAGGTTCATG CGGCTAACAAGCTTGCTAGTAAGCATCAGAGGATTCCACTTTCTACTTCTTCTCCTCAGATGCCTAAATGTGATATTTGTCAGGAGACTGCTGGTTTTTT CTTTTGTCTAGAAGATAGAGCATTGCTCTGCAGGAAATGTGATGTTGCCATACACACAGCAAATACCCATGTGTCTGTTCATCAGAGATTTCTGCTCACT GGAGTAAAGGTAGGTCTAGAACCTACTGATCCTGGTGCATCCTCTTCCTCAGGAAAGTCACCTTCAGGGGAAAAGAAAACCTTGGAAACAAAATCACGCC CTGTTTCTAGAAGAGGCACCTTATTGCCTTTGGCCAATCCTTGCAATCAAGTTTCGACTGTGAATGTCTGTGGAGTTGGAGACTTTGGGCCTGCTAAGCT GCCCTATTCTGGAGGTTCAGCAACTTCCAGCATTTCACAGTGGCATATAGATGAATTTCTCGATCTGCCTGAGTTTAATCAAAATTATGGCTATATTGAT AATGGATCTTCTAAGGCTGATAGTGGCAAACGTGGAGATTCTGACTGCTCTGCCATTTTAAGGTCAACTGAAGAAGAGGTGGATGATGAAGAATGCTTGG GTCAGGTGCCAGATAGCTCCAGGGCAGTTCCCCAAATCCCTTCCCCACCTACAGCCTCGGGGCTATACTGGCCAAAAAGTTTTCATAATCATTCCGAGAC AGCAATTTTTGTGCCTGATATATGTTGTTCAGTTGTGCAGAACTGTCATTACAGTGAACAGCGTGGCACTGTTTCCAAACGGCAGCGGCAACTCTAG
AA sequence Show only first row Show all	>Potri.011G105400.1 pacid=42780794 polypeptide=Potri.011G105400.1.p locus=Potri.011G105400 ID=Potri.011G105400.1.v4.1 annot-version=v4.1 MKIQCNVCEAAEAKVLCCADEAALCWTCDEKVHAANKLASKHQRIPLSTSSPQMPKCDICQETAGFFFCLEDRALLCRKCDVAIHTANTHVSVHQRFLLT GVKVGLEPTDPGASSSSGKSPSGEKKTLETKSRPVSRRGTLLPLANPCNQVSTVNVCGVGDFGPAKLPYSGGSATSSISQWHIDEFLDLPEFNQNYGYID NGSSKADSGKRGDSDCSAILRSTEEEVDDEECLGQVPDSSRAVPQIPSPPTASGLYWPKSFHNHSETAIFVPDICCSVVQNCHYSEQRGTVSKRQRQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.002G235900 [exp]	1.41	0.8660
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	4.69	0.8632
AT1G73980			Phosphoribulokinase / Uridine ...		Potri.015G055400 [exp]	7.93	0.8426
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	8.83	0.8595
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	9.38	0.8386	GI.1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	13.56	0.8436
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	13.71	0.8497
AT5G35460			unknown protein		Potri.006G145600 [exp]	15.00	0.8320
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	16.09	0.8453
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.012G002600 [exp]	19.18	0.7564

Compare expression of checked genes

Potri.011G105400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.