Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 868 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 852 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 830 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 702 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 476 / 1e-155 Mechanosensitive ion channel family protein (.1) AT5G12080 465 / 8e-152 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 432 / 4e-139 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 43 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384100 [exp] 1355 / 0 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 850 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 680 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G222500 [exp] 494 / 4e-162 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 486 / 4e-159 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 473 / 6e-155 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 468 / 3e-153 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 1054 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 1041 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 853 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 776 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 737 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 733 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 580 / 0 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 565 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10036587 [exp] 457 / 2e-149 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 450 / 5e-146 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.011G105500.1 pacid=42782016 polypeptide=Potri.011G105500.1.p locus=Potri.011G105500 ID=Potri.011G105500.1.v4.1 annot-version=v4.1 ATGGCCCTTAATTCAACTGACCTGAAAGAAGTGATTGTGAGCATGGACGGCTTCGATGACAGTGGTGTTAAAGTGATGTTGAATAACAGAGGAGGAGGAG GACGAGGAGGAGGGGGGATTTGGAGGGAATCAAGCTATGATTTCTTGAATGATGCAAATAAAAAAGATAAGCGACGTGTTATTAATGGAGACGACGACGA CGACGACGACGACAACAACAACAACAACAACAACAGTGATGGAAATGGAAGTCACGAATTTGATTTTAAAGGTCATCAGAACATTAACAGTAACAATGGT GTTACTGTTAGTGCTAGTGGTAGCGGTTCATCGAAGGAGGAAGAAGATCCACCCTCGAAGCTGATTGGTCAGTTCTTGCACAAACAGAAAGCATCGGGTG AGTTTTGTTTAGATATGGACTCTGAGATGATGACTCATCTCCAGGACGACGCTGTTGTTTTTCATAAGAGTTTAGCTCCGGTTTCTGAATCTCCTACTGC TATTATGAATCGGGTCTCTTTCGACCCGAACCCACCAGGGTCAAGTGAATCAGTGAGGAGGAGAAGGGATTTTAAAGATTCTTCTCCAACTAAAGAAAGT AACGGTGGTACTGATGATGGTGAGATTTTGAAGTGTAGTTCTAGAAACCACAGGTCTTTTTCGAGTAATCCCTCGTTTAAGAGGAAGTCTACTTTGTTGA AGGACAGGCCAAAGTCTAGATTGATGGACCCGCCACCGCAGCCGCCGGAGAAGTCGGGAAGAGTGGCAGTTGGGAGGTCGGGGCTGTTAAAGTCTGGATT TTTAGGGAAAGGGAGTGTTGTTGATGAAGAGGAAGATGACCCTTTATTGGAAGAGGATTTGCCCGAAGAGTATAAAAAAGATAGGCTTGATATTTGGATT TTACTTGAATGGGTGAGTTTGATTATTATTATTGCTGCTTTAGTTTGTAGTCTTGCAATTCCATATTTGAGAGAGAAGGATTTTTGGAGACTTAGGTTGT GGAAATGGGAAGTTTTTGTTTTAGTTTTGATTTGTGGGAGGTTGGTTTCAGGTTGGGTTATTAGGATCATCGTGTTTTTCATTGAGAGAAACTTTCTCTT GCGGAAACGGGTTTTGTATTTTGTTTATGGAGTTAGGAAAGCTGTGCAAAATTGTTTGTGGTTAGGGCTTGTTTTGATTGCCTGGCACTGCTTGTTTGAC AAGAAAGTTGAGAGGGAAACTCGGAGTGACAAACTTAGATATGTGACTAAGGTTCTGGTCTGTTTAGTTGTGGGTACCTTGTTGTGGTTGGTGAAGACCT TAGTGGTTAAAGTTCTTGCATCTTCATTTCATGTGAGCACTTACTTTGATCGGATCCAGGAGTCGTTGTTTAATCAATATGTGATTGAAACCCTATCTGG TCCCCCATTGGTTGAAATGAGAAGGAATGAGGAAGAGGAAGAGAGACTTCTGGCAGAAGTACAAAAGTTGCAGAATGCAGGTGCCACCGTGCCCCCCGGC CTTAAGGCAACTGCGAGCCTTTCACCACCACAGAGTGCAAAGGTTATCGGAAGTGGAAGGCTCCAGAAAAGCCCTCGAATAGGTACCCCCAAGCTCTCTC GTTCTCTTTCTAACAAATTTGACGAGGGAGATGAGGGTATAACGATCGACCACTTGCACAAATTGAATCCTAAGAATGTTTCTGCTTGGAATATGAAGAG GCTGATGAATATAATTCGACATGGAGCTCTGTCCACGCTGGATGAGAAGATACAAAATTCTAATGACGGTGATGAAGAGTCTGCTACAAAGATTAGAAGT GAAATTGAAGCGAAGGCTGCAGCAAGGAAAATATTCCAGAATGTGGCTAGGCCAGGGTGTCGGTATATCTACTTGGATGACATCACGCGTTTCATGCAAG ATGATGAGGCTGCAAAGACCATGAGCCTCTTTGAGGGAGCATCTGAAAGCAAAAAAATCAGCAAAAAATGTTTGAAAAACTGGGTGGTTAATGCTTTCAG AGAACGGAGAGCACTTGCTTTGACACTGAATGACACAAAAACTGCTGTTAACAAACTGCATCGTATGGTGAACATTATGGTTGGGATTGTTATAGCAGTT ATTTGGCTTCTTATACTAGGAATTGCTACTAGCAAGTTTCTCCTCTTTCTAAGTTCACAACTTCTCCTTGTGGCGTTCATATTTGGAAACACCTGCAAAA CTGTGTTTGAGTCTATTATTTTCCTGTTTGTAATCCATCCATTTGATGTGGGCGATCGCTGTGAAGTTGATGGAGTTCAGATGGTGGTTGAAGAGATGAA CATTTTAACTACTGTCTTTTTAAGATTTGACAACCAGAAGATAATAATTACAAACAGTGTTCTTGCTACCAAAGCGATTGGTAACTACTACCGTAGCCCA GATATGGGAGATGCAGTTGAGTTCCTCATCCACCTAGCTACCCCAGCTGAAAAGATTGTCATTGTGAAACAAAGAATAAACAGCTATATTGAGAACAAAA AGGACCACTGGTATCCTTCCCCCATGATTATATTCAAGGATGCAGAAGACTTGACCAGGGTACGGATAGCAGTTTGGTTGACTCATAGGATGAACCACCA AGACATGGGGGAGAGGTTTGTAAGAAGATCTCTCTTGCTGGATGAGATGATGAGAATTTTCAGGGAGCTCGACATGCAATATCGCCTTCTTCCTCTTGAC ATCAATGTTCGTGCCTTGCCACCTGTCACCTCTGACCGCCTTCCTGCCAATTGGACCAGCTGA
AA sequence Show only first row Show all	>Potri.011G105500.1 pacid=42782016 polypeptide=Potri.011G105500.1.p locus=Potri.011G105500 ID=Potri.011G105500.1.v4.1 annot-version=v4.1 MALNSTDLKEVIVSMDGFDDSGVKVMLNNRGGGGRGGGGIWRESSYDFLNDANKKDKRRVINGDDDDDDDDNNNNNNNSDGNGSHEFDFKGHQNINSNNG VTVSASGSGSSKEEEDPPSKLIGQFLHKQKASGEFCLDMDSEMMTHLQDDAVVFHKSLAPVSESPTAIMNRVSFDPNPPGSSESVRRRRDFKDSSPTKES NGGTDDGEILKCSSRNHRSFSSNPSFKRKSTLLKDRPKSRLMDPPPQPPEKSGRVAVGRSGLLKSGFLGKGSVVDEEEDDPLLEEDLPEEYKKDRLDIWI LLEWVSLIIIIAALVCSLAIPYLREKDFWRLRLWKWEVFVLVLICGRLVSGWVIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWHCLFD KKVERETRSDKLRYVTKVLVCLVVGTLLWLVKTLVVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEMRRNEEEEERLLAEVQKLQNAGATVPPG LKATASLSPPQSAKVIGSGRLQKSPRIGTPKLSRSLSNKFDEGDEGITIDHLHKLNPKNVSAWNMKRLMNIIRHGALSTLDEKIQNSNDGDEESATKIRS EIEAKAAARKIFQNVARPGCRYIYLDDITRFMQDDEAAKTMSLFEGASESKKISKKCLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNIMVGIVIAV IWLLILGIATSKFLLFLSSQLLLVAFIFGNTCKTVFESIIFLFVIHPFDVGDRCEVDGVQMVVEEMNILTTVFLRFDNQKIIITNSVLATKAIGNYYRSP DMGDAVEFLIHLATPAEKIVIVKQRINSYIENKKDHWYPSPMIIFKDAEDLTRVRIAVWLTHRMNHQDMGERFVRRSLLLDEMMRIFRELDMQYRLLPLD INVRALPPVTSDRLPANWTS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.011G105500 [exp]	0	1
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.013G112200 [exp]	7.68	0.7929
					Potri.002G127201 [exp]	8.06	0.7091
AT4G24970			Histidine kinase-, DNA gyrase ...		Potri.015G100900 [exp]	8.36	0.7334
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	9.94	0.7373	Pt-ATRLI1.1
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Potri.015G083400 [exp]	11.18	0.6985
AT2G01480			O-fucosyltransferase family pr...		Potri.010G111500 [exp]	21.86	0.7414
AT1G77680			Ribonuclease II/R family prote...		Potri.002G086400 [exp]	29.22	0.7272
AT5G07330			unknown protein		Potri.012G111000 [exp]	29.93	0.7351
AT2G01100			unknown protein		Potri.008G126800 [exp]	30.59	0.6985
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	32.46	0.6943

Compare expression of checked genes

Potri.011G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.