Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29800 703 / 0 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT3G43230 393 / 3e-132 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G20110 56 / 6e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G61690 49 / 1e-05 phosphoinositide binding (.1) AT3G47660 47 / 3e-05 Regulator of chromosome condensation (RCC1) family protein (.1) AT4G33240 46 / 5e-05 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G23270 46 / 6e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 46 / 8e-05 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G14270 46 / 9e-05 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G76950 43 / 0.0005 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062500 [exp] 727 / 0 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G071900 [exp] 702 / 0 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.006G135800 [exp] 389 / 4e-131 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.018G064200 [exp] 383 / 2e-128 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G242700 [exp] 60 / 3e-09 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G018900 [exp] 59 / 4e-09 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G032200 [exp] 56 / 9e-08 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.008G167500 [exp] 47 / 3e-05 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G163200 [exp] 47 / 4e-05 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007320 [exp] 664 / 0 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10029271 [exp] 660 / 0 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10027659 [exp] 388 / 2e-130 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10039922 [exp] 382 / 3e-128 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10013571 [exp] 59 / 5e-09 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017277 [exp] 59 / 7e-09 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10018391 [exp] 50 / 5e-06 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10007623 [exp] 49 / 5e-06 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10030999 [exp] 47 / 4e-05 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038129 [exp] 46 / 0.0001 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF04366 [poplar] [flax] Ysc84 Las17-binding protein actin regulator
Representative CDS sequence Show only first row Show all	>Potri.011G106700.1 pacid=42781079 polypeptide=Potri.011G106700.1.p locus=Potri.011G106700 ID=Potri.011G106700.1.v4.1 annot-version=v4.1 ATGGAGGGACATATACAATACCCTAAAATCCAATTAGATGATTACCAGCCTCAATATCTCTCTCACTTGATTTCTAAAGAGATGGAGGACCATAGATGTA AAAGCAATATAATACCAAAAAATGCTGTTGCACAAGAAGATAGGACACTGCTCAGAAAATGTGAAAGTGAAGCGTCTCAACCTGACACGGCTAACAATGG TGTGGAAAATGTTTCAAAGACCTGCCATTCAAAGCAGGGTAAAGTTTTTTTTTATGATACACCACACTCTGAAGAAACTGGAGTTTGGATACCTGTCTCT GTTCCACCAATGTCAGAAAGTGAACATCAAGAATGGAGTAGAGGTCTCCCTCTTAATGGGGGATGCTTCCCTGATGAAGATCTAGATTGGAATCAGCTCC TTGAGAACAATAAGGAGCTGACCATGTGGGATGTGGTTGCTGAGATGTTGGTAGCAGCTCGAGGAAAAGTGAGTGCCATTGCTTCTGGAGATGTCCACAG ATGTGGAATTTCCTGGATATCAGATCATCTTCTTGAGCAAGCTTGGAGTGAGATGGCCCAAACTCTTACAGAGGCTAATTTTGGCAACAGCTGGGAGATT CTTGAAGCCAAGCCTCCAAAGTGGTTGGCTGATAGTTCTGCTTCTGCTTGCATGTTGTGTAATGTAAGATTCCATCCTATCATGTGCTCCAGGCATCACT GCCGTTTTTGTGGTGGAATATTTTGTAATGATTGCTCAAAGGGGAGAAGCTTGTTGCCCAAAAATTTCCACACCAGAAACCCGCAACGTGTTTGTGATGT GTGCTGTGTGCGGCTTGAGTCAGTGCAATCATACTTGAAGGACCATGAAAGTCGCGCTGCTCAGTTGCCAACACAAGATCTAACTGACCTCAGTACTTTG AGATCATGGCTCAATTTCCCATGGGGCCAGTCCATGGAGTATGAGATTTACAAGGCCACAAACACCATTCAGGGTTATGCTAAGGTTGGTTCTCTACTGC CTGAGAAGTCCATACCGGATTCTATTTTGAAACAAGCAAAAGGCCTTGCAATCCTTACAATTGCAAAGGTTGGTGTAATGGTGACCTACAACATTGGGAC GGGACTAGTTGTTTCTCGTAGGGAGGATGGATCCTGGTCTCCACCATCAGCCATTTCTTCCTTTGGCATGGGCTGGGGAGCTCAGGTTGGAGGGGAATTT ACTGATTTCATAATTGTGCTGAGAACTTTGGGTGCTGTTAAAACATTCAGTGGAAATCTGCACTTCTCAGTTGGAGCTGGTTTGAGTGCAGCTGTTGGCA TTGTTGGACGGGCTGCTGAAGCTGATTTAAGGGGTGGTGATGGTGGTTTGGCTACCTGTTACACTTATAGCTGCAGTAAAGGTGCATTTGTTGGATGTTC ACTTGAAGGAAGTATACTTGCAACTCGAACACAGGAAAATGCAAGATTTTATGGTGCATCCATGAATGCATCAGATATTCTTCTGGGGTCACTGCCCGGG CCTCCTGCTGCTTCCATGCTTTATCATGCTCTCTCGAATCTTTTTGGTAAGCTTGAGAGGTGA
AA sequence Show only first row Show all	>Potri.011G106700.1 pacid=42781079 polypeptide=Potri.011G106700.1.p locus=Potri.011G106700 ID=Potri.011G106700.1.v4.1 annot-version=v4.1 MEGHIQYPKIQLDDYQPQYLSHLISKEMEDHRCKSNIIPKNAVAQEDRTLLRKCESEASQPDTANNGVENVSKTCHSKQGKVFFYDTPHSEETGVWIPVS VPPMSESEHQEWSRGLPLNGGCFPDEDLDWNQLLENNKELTMWDVVAEMLVAARGKVSAIASGDVHRCGISWISDHLLEQAWSEMAQTLTEANFGNSWEI LEAKPPKWLADSSASACMLCNVRFHPIMCSRHHCRFCGGIFCNDCSKGRSLLPKNFHTRNPQRVCDVCCVRLESVQSYLKDHESRAAQLPTQDLTDLSTL RSWLNFPWGQSMEYEIYKATNTIQGYAKVGSLLPEKSIPDSILKQAKGLAILTIAKVGVMVTYNIGTGLVVSRREDGSWSPPSAISSFGMGWGAQVGGEF TDFIIVLRTLGAVKTFSGNLHFSVGAGLSAAVGIVGRAAEADLRGGDGGLATCYTYSCSKGAFVGCSLEGSILATRTQENARFYGASMNASDILLGSLPG PPAASMLYHALSNLFGKLER

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	0	1
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	1.73	0.9028	STGA1.2
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Potri.002G035900 [exp]	2.00	0.8938
AT2G31130			unknown protein		Potri.013G118000 [exp]	4.24	0.8694
AT5G64610		HAM1	histone acetyltransferase of t...		Potri.005G171700 [exp]	4.69	0.8637
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	4.89	0.8705
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.003G110901 [exp]	6.48	0.8593
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	8.00	0.8540
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	8.24	0.8526
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	8.30	0.8410	Pt-HDA9.2,HDA904
AT5G14500			aldose 1-epimerase family prot...		Potri.001G344100 [exp]	8.36	0.8707

Compare expression of checked genes

Potri.011G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.