Plant FIBer expression Database

Pt-KU70.1 (Potri.011G107400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-KU70.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16970 923 / 0 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G132501
[exp]
119 / 1e-31 AT1G16970 52 / 2e-08 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Potri.004G093250
[exp]
67 / 3e-13 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005783
[exp]
790 / 0 AT1G16970 703 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
Lus10006818
[exp]
788 / 0 AT1G16970 693 / 0.0 ARABIDOPSIS THALIANA KU70 HOMOLOG, KU70 homolog (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF02037 SAP SAP domain
CL0616 SPOC PF02735 Ku Ku70/Ku80 beta-barrel domain
CL0616 PF03730 Ku_C Ku70/Ku80 C-terminal arm
CL0128 vWA-like PF03731 Ku_N Ku70/Ku80 N-terminal alpha/beta domain
Representative CDS sequence
>Potri.011G107400.3 pacid=42781448 polypeptide=Potri.011G107400.3.p locus=Potri.011G107400 ID=Potri.011G107400.3.v4.1 annot-version=v4.1
ATGGAGTTGGACCCTGATGACATCTTTAAAGACGACGAAGACGATCCCGATAGCGAATTCTATCAGCAAAGAGAATCGTCGAAAGAATTCGTGGTCTACC
TTGTCGATGCTTCCCCCAAAATGTTCTCATCTACTTGCCCTTCTGAGGACGGAAAGGAAGAAACTCATTTCCACATAGCTATCAGTTGTATTGCGCAGTC
ATTGAAGACCCAAATAATTAATAGATCGTATGATGAAGTTGCAATCTGCTTCTTTAACACTAGGGAGAAGAAGAATTTGCAGGATCTAAATGGTGCTTTT
GTATTCAATGTTGCGGAGAGAGAGTATCTAGACAGGCCAACTGCAAGGCTTATCAAAGATTTTGATTGCATAGAGGAATCATTCACGAAAGACATTGGCA
GTCAGTATGGTATTGTGTCTGGGTCTCGGGAGAATTCCCTTTACAATGCTCTCTGGATAGCGCAAGCATTGTTGCGTAAAGGATCTGCGAAAACAGCTGA
TAAACGGATTCTTTTATTTACAAACGAAGATGATCCTTTTGGGAGCATCAAGGGTGTAGCCAAAGCAGATATGACCAGGACAACATTGCAGCGAGCTAAA
GATGCACAAGATCTTGGCATCTCAATTGAACTTCTCCCCTTGAGTCAACCTGATGAGGAGTTCAATGTTTCACTTTTCTATTCTGATTTGATTGGGTTGG
AGGGTGATGAACTTGCTCAGTTTATGCCTTCAGCAGGACAAAAATTGCAAGATATGAAAGATCAGCTTAGAAAACGAATGTTTACAAAGCGAATAGTAAG
AAGAATCACATTGTCAATTGCAAATGGATTGTCAATTGAGCTGAATACATATGCTTTGATTCGTCCAACTTTGCCAGGGGCAATTACGTGGCTTGATTCT
GTCAGCAATCGTCCTTTGAAGACCGAGAGATCTTTTATCTGTGCCGATACTGGTGCATTGATGCAAGAACCTGCAAAACGATATCAGCCTTACAAAAATG
ACAATATCATGTTGTCTGTCGAGGAGCTGTCTGAGATAAAAAGAGTTTCAACGGGACATCTTCATCTTCTTGGATTCAAGCCCTTAAGTTGCTTGAAAGA
TTATCACAACTTGAGGCCTTCGACATTTATTTTTCCTAGTGACAAGGAAGTAATTGGTAGCACTTGCATTTTCATTGCCCTGCTTAGATCCATGGTAAAC
CTTAAACGTTTTGCAGTTGCATTTTATGGAAGCTCATCTCGTCCTCAATTGGTTGCCCTTGTTGCACAAGATGAGATTATTAGTGCTGGTGGTCAGGTTG
AGCCACCTGGAATGCACATGATATATCTTCCCTATTCTGATGATGTCAGGCATGTTGAAGAGATTCATTCAGACACAAATGCTGGGGCACCTCGAGCTAC
TGATGAACAAATTAAAAAGGCTGCTGCTTTAATAAAACGCATTGACTTGAAAGATTTTTCTGTATTCCAATTTGCTAACCCTGGTTTGCAGAGACACTAT
GCAGTTCTGCAGGCCCTAGCTCTGGATGAAGATGACATGCCAGAAATCAATGATGAAACACTTCCTGATGAAGAAGGCATGGCCAGACCAGGAGTTGTTA
AAGCAGTTGAAGAGTTCAAGCTTTCTGTCTATGGAGAAAATTATGACGAGGAAAGTGACATGGGCAGTGGAAAAGCAAGCGACGCCTCCAAAAAACGGAA
AACAGCTGCTGAAAATGCAGCTAAGGAGTCTGCAAACTACAACTGGCCTGATCTTGCTGACAACGGACAGTTGAAGGACTTGACAGTAACAGAGCTGAGG
TATTACTTGACAGCGCACAATCTTCCAGTTACAGGGAAGAAGGAAGTTTTGATCAGCAGGATATTAACTCACTTGGGAAAGTGA
AA sequence
>Potri.011G107400.3 pacid=42781448 polypeptide=Potri.011G107400.3.p locus=Potri.011G107400 ID=Potri.011G107400.3.v4.1 annot-version=v4.1
MELDPDDIFKDDEDDPDSEFYQQRESSKEFVVYLVDASPKMFSSTCPSEDGKEETHFHIAISCIAQSLKTQIINRSYDEVAICFFNTREKKNLQDLNGAF
VFNVAEREYLDRPTARLIKDFDCIEESFTKDIGSQYGIVSGSRENSLYNALWIAQALLRKGSAKTADKRILLFTNEDDPFGSIKGVAKADMTRTTLQRAK
DAQDLGISIELLPLSQPDEEFNVSLFYSDLIGLEGDELAQFMPSAGQKLQDMKDQLRKRMFTKRIVRRITLSIANGLSIELNTYALIRPTLPGAITWLDS
VSNRPLKTERSFICADTGALMQEPAKRYQPYKNDNIMLSVEELSEIKRVSTGHLHLLGFKPLSCLKDYHNLRPSTFIFPSDKEVIGSTCIFIALLRSMVN
LKRFAVAFYGSSSRPQLVALVAQDEIISAGGQVEPPGMHMIYLPYSDDVRHVEEIHSDTNAGAPRATDEQIKKAAALIKRIDLKDFSVFQFANPGLQRHY
AVLQALALDEDDMPEINDETLPDEEGMARPGVVKAVEEFKLSVYGENYDEESDMGSGKASDASKKRKTAAENAAKESANYNWPDLADNGQLKDLTVTELR
YYLTAHNLPVTGKKEVLISRILTHLGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16970 KU70, ATKU70 ARABIDOPSIS THALIANA KU70 HOMO... Potri.011G107400
[exp]
0 1 Pt-KU70.1
AT5G58290 RPT3 regulatory particle triple-A A... Potri.006G029100
[exp]
2.44 0.7860
AT1G59750 ARF ARF1 auxin response factor 1 (.1.2.... Potri.003G001000
[exp]
4.24 0.7768 Pt-ARF1.11
AT3G49400 Transducin/WD40 repeat-like su... Potri.012G021900
[exp]
11.22 0.7432
AT1G15240 Phox-associated domain;Phox-li... Potri.001G183100
[exp]
18.00 0.7372
AT1G80490 TPR1 TOPLESS-related 1 (.1.2) Potri.003G030000
[exp]
19.44 0.7473
AT3G54070 Ankyrin repeat family protein ... Potri.014G058100
[exp]
23.23 0.7605
AT1G63470 AT-hook AT hook motif DNA-binding fami... Potri.001G104900
[exp]
25.49 0.7385
AT4G16650 O-fucosyltransferase family pr... Potri.003G077500
[exp]
25.82 0.7428
AT3G63150 ATCBG, MIRO2 CALCIUM BINDING GTP-ASE, MIRO-... Potri.005G209000
[exp]
26.55 0.7499
AT1G74520 ATHVA22A HVA22 homologue A (.1) Potri.001G283000
[exp]
27.12 0.7191

Potri.011G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.