Plant FIBer expression Database

Potri.011G107600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78680 489 / 1e-173 ATGGH2 gamma-glutamyl hydrolase 2 (.1.2)
AT1G78660 473 / 3e-167 ATGGH1 gamma-glutamyl hydrolase 1 (.1.2.3)
AT1G78670 451 / 1e-158 ATGGH3 gamma-glutamyl hydrolase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G110400
[exp]
697 / 0 AT1G78680 478 / 1e-168 gamma-glutamyl hydrolase 2 (.1.2)
Potri.003G026800
[exp]
654 / 0 AT1G78680 501 / 8e-179 gamma-glutamyl hydrolase 2 (.1.2)
Potri.001G387100
[exp]
649 / 0 AT1G78680 501 / 2e-178 gamma-glutamyl hydrolase 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028143
[exp]
532 / 0 AT1G78680 477 / 4e-169 gamma-glutamyl hydrolase 2 (.1.2)
Lus10042847
[exp]
531 / 0 AT1G78680 481 / 7e-171 gamma-glutamyl hydrolase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF07722 Peptidase_C26 Peptidase C26
Representative CDS sequence
>Potri.011G107600.1 pacid=42781081 polypeptide=Potri.011G107600.1.p locus=Potri.011G107600 ID=Potri.011G107600.1.v4.1 annot-version=v4.1
ATGCCTTCACACTTCCTCTCTAATTCCCCTTCTACCCCTACCACCAAAACCTCTGACCTCCAAAACGACACCGCCGTTTCCCTCACCTCAACCTCCTCCT
CCTCCTCCTCCTCCTCTACTGCTCCAGACATGTGGACTTACCTTTGGATCCCTTTCTTAATGTCACTCTCTAAAGAGCTAACCCTAGCTCGAGCAGCAAC
AGCTACAACTTCTTCTCCTTCGATTCTCCCCCCGAGTCAACTCGCCGATGATGACTCGCCTTCCGTGCCTAGGTGTTCGGCCCCGGACATCAAGTTGAAT
TACCGGCCGGTGATTGGAATTTTAAGTCATCCAGGCGACGGTGCCTCCGGAAGGCTGAACAACGCGACAAACGCTTCGTATATTGCGGCGTCGTACGTTA
AGTTTGTTGAATCGGCTGGTGCCAGGGTTATTCCCTTGATTTATAACGAGCCACGAGAGATTCTTTTTGAGAAGCTCAATCTGGTAAATGGAGTGCTCTT
TACAGGAGGTTGGGCTAAAACTGGTTTATACTTTGACACTGTGAAGGCAATTTTCAAGGAAATTTTAGCAAAGAATGATGCAGGCTTCCATTTCCCAGTG
TATGCCATCTGCTTAGGCTTTGAAATCCTTACAATGATCATTAGTGAGGACAATCAAATTCTGGAAACATTTAATGCAGCAGATCAGGCTTCTACTCTTC
AATTTATGAATAACATAAATATCAAAGGAACTGTATTTCGGAGATTTCCTCCAGATTTGCTTAAAAGATTGAGTACAGATTGCCTAGTCATGCAAAACCA
TCGTTATGGCATCTCACCACAACGGTTTCAGGAGAATGAACATCTATCTAGTTTCTTTGAGATCTTGACTACTAGTACAGATGAAGATAACCAGGTCTAT
GTCTCCACTGTACAAGCTTGCGGCTATCCTGTGACTGCCTTCCAATGGCATCCTGAGAAAAATGCTTTTGAATGGGGTTTATCAATGATTCCACACTCAG
AGGATGCCATTCAAGTTACCCAACACATTGCAAACTTCTTTGTTAGTGAAGCTAGAAAGTCCTTGAACAGGCCATCTTCTCGGAAGGTACTCGCCAATTT
AATCTACAATTACAGTCCCACATATTGCGGGAAAGCTGGGAAGGGATATGATGAGGTTTACATCTTCTCAGAGCAAAAGGCACCGAAGTATACAAGGTGC
GCTGTGCATGGTGATTGTCATGGACATGTGAAGTTGTAA
AA sequence
>Potri.011G107600.1 pacid=42781081 polypeptide=Potri.011G107600.1.p locus=Potri.011G107600 ID=Potri.011G107600.1.v4.1 annot-version=v4.1
MPSHFLSNSPSTPTTKTSDLQNDTAVSLTSTSSSSSSSSTAPDMWTYLWIPFLMSLSKELTLARAATATTSSPSILPPSQLADDDSPSVPRCSAPDIKLN
YRPVIGILSHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPREILFEKLNLVNGVLFTGGWAKTGLYFDTVKAIFKEILAKNDAGFHFPV
YAICLGFEILTMIISEDNQILETFNAADQASTLQFMNNINIKGTVFRRFPPDLLKRLSTDCLVMQNHRYGISPQRFQENEHLSSFFEILTTSTDEDNQVY
VSTVQACGYPVTAFQWHPEKNAFEWGLSMIPHSEDAIQVTQHIANFFVSEARKSLNRPSSRKVLANLIYNYSPTYCGKAGKGYDEVYIFSEQKAPKYTRC
AVHGDCHGHVKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.011G107600
[exp]
0 1
AT1G78680 ATGGH2 gamma-glutamyl hydrolase 2 (.1... Potri.012G110400
[exp]
1.41 0.8475
AT1G22930 T-complex protein 11 (.1.2) Potri.013G105300
[exp]
19.69 0.7523
AT3G17611 ATRBL14 RHOMBOID-like protein 14 (.1.2... Potri.010G004600
[exp]
24.37 0.7483
AT2G47620 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3... Potri.015G100400
[exp]
24.97 0.7263
AT5G50390 EMB3141 EMBRYO DEFECTIVE 3141, Pentatr... Potri.015G095100
[exp]
30.74 0.6585
AT2G24640 UBP19 ubiquitin-specific protease 19... Potri.018G009500
[exp]
41.47 0.7023
AT3G07150 unknown protein Potri.002G244400
[exp]
42.82 0.7058
AT4G10925 Nuclear transport factor 2 (NT... Potri.001G089600
[exp]
44.87 0.6630
AT1G56170 CCAAT NF-YC2, ATHAP5B... "nuclear factor Y, subunit C2"... Potri.007G070900
[exp]
48.21 0.6865
Potri.008G195401
[exp]
50.37 0.6986

Potri.011G107600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.