Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14860 553 / 0 NHL domain-containing protein (.1.2) AT1G70280 239 / 4e-73 NHL domain-containing protein (.1.2) AT1G23880 239 / 9e-73 NHL domain-containing protein (.1) AT5G14890 199 / 3e-56 NHL domain-containing protein (.1) AT1G23890 154 / 2e-43 NHL domain-containing protein (.1.2) AT1G56500 57 / 3e-08 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387500 [exp] 719 / 0 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 272 / 1e-85 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 255 / 2e-79 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 241 / 7e-74 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 146 / 4e-39 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 143 / 8e-38 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.013G007800 [exp] 66 / 3e-11 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030850 [exp] 231 / 1e-68 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10029176 [exp] 225 / 4e-67 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10014529 [exp] 216 / 1e-64 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 213 / 1e-63 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 205 / 2e-62 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10012989 [exp] 211 / 7e-62 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10039484 [exp] 206 / 3e-60 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10030849 [exp] 144 / 3e-38 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 102 / 1e-23 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2) Lus10030637 [exp] 92 / 8e-20 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01436 [poplar] [flax] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Potri.011G107800.1 pacid=42780401 polypeptide=Potri.011G107800.1.p locus=Potri.011G107800 ID=Potri.011G107800.1.v4.1 annot-version=v4.1 ATGAGAAGATCCCATTTCTCCTATACTTTAGTACTAGCAGTTCTTTCTTTAGCTTGTACATTTCAGTTCCAAGCTCATGCTGCTCCTCCAGCGCCATTGG TTAAGCACTTGTCTTCTCTTCTCAAATGGACCACCACCGTGGCATCCTTGAAAACACCCCAATCAGATGAGAATGTTCTTCAATTTGAGGATGGATACTT AGTTGAGACTGTTGTAAAAGGAAATGCAATGGGAGTGGTTCCTTACAAAATCCGCTTATCTGAAGATGGTGAACTATATGCTGTCGATGAAGTTAATAGC AACGTTGTTAAGATCAGTCCACCTTTGTCCCAATATAGTAGAGCAAGATTGGTGGCCGGCTCATTTCAGGGTTATACAGGACATATTGACGGAAAACCGA ACGAAGTTCGTTTTAATCATCCCAGAGGTCTAACCATGGATGATAAAGGAAACATATACGTTGCTGATTCTTTGAATCATGCCATCAGAAAGATTGGAGA TGCAGGTGTCACAACCATTGCTGGGGGGAAATCAAACGTTGCAGGTTTTAGAGATGGACCCAGCGAAGATGCCAAGTTCTCAAATGATTTTGATGTGGTG TATGTTCACTCTACCTGTTCCTTGTTAGTTGTTGATAGAGGAAATGCTGCGCTTCGACAAATCTCTCTCAACCAAGAGGATTGTGATTATCAGTCCAGTT CATTTACCATGACAGATGTGCTTATGGTCGTTGGTGCTGTCCTGATTGGATATGCTACGTGCATGCTTCAGCTGGGGTTTGGGTCTTCTTCCTCCTCAAG AATGCAACAATCTTCAGAGAGTGAATATAAAGAGAAATCAAGTAAGGAGAAACCCATTCCTATCGTGGACAACATGAAAGAGGAGCCCAAGTGGCCATCT TTTGGACAGCTTTTCATTGATCTGTCTAAGCTTGCTCTTGAAGCATTGGTTGGTATACTCCTCTCTTTTGTTCCTTCTTGGTACAAACCGGGTGGAGCCA GAAAAGGCCTCACCCCATTGAAAGATTCTCTAATTATGCCTGACGATGAAGTTGAGCCTCCATCAGTTCAAAGGCAGAGTACTCCTGCTCCTGTATCTGA AAATCGCCAGGTCCAAACTCCAACTACAAGTGATAAGTACTCGGAAATGAAGCTACCGAAGATCAAGTCTGCTAGTTTTAAGGATCCTTCTCCATTGAGC AAGCACCGGTCTTCAAAACAACAAGAATATGCAGAATTCTATGGATCAGGTGAGGTTCCTTCTCATGGCAGGTCAAAGAGCCACAAAGAAAAATCAAGAC ATCGCCAACGAGATAAGAGTGGAGAGGTAGTTTTTGGAGCTGTGGGGGCTGAGCCAAAACCTGCTGAGATGAATCCTGTGGATTACAATAGTCCAAAATT CAACCATTACAATAACAGAAGCAAGTATGGATCTGACAGTTTGTACCGATTTTGA
AA sequence Show only first row Show all	>Potri.011G107800.1 pacid=42780401 polypeptide=Potri.011G107800.1.p locus=Potri.011G107800 ID=Potri.011G107800.1.v4.1 annot-version=v4.1 MRRSHFSYTLVLAVLSLACTFQFQAHAAPPAPLVKHLSSLLKWTTTVASLKTPQSDENVLQFEDGYLVETVVKGNAMGVVPYKIRLSEDGELYAVDEVNS NVVKISPPLSQYSRARLVAGSFQGYTGHIDGKPNEVRFNHPRGLTMDDKGNIYVADSLNHAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVV YVHSTCSLLVVDRGNAALRQISLNQEDCDYQSSSFTMTDVLMVVGAVLIGYATCMLQLGFGSSSSSRMQQSSESEYKEKSSKEKPIPIVDNMKEEPKWPS FGQLFIDLSKLALEALVGILLSFVPSWYKPGGARKGLTPLKDSLIMPDDEVEPPSVQRQSTPAPVSENRQVQTPTTSDKYSEMKLPKIKSASFKDPSPLS KHRSSKQQEYAEFYGSGEVPSHGRSKSHKEKSRHRQRDKSGEVVFGAVGAEPKPAEMNPVDYNSPKFNHYNNRSKYGSDSLYRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14860			NHL domain-containing protein ...		Potri.011G107800 [exp]	0	1
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.012G024300 [exp]	15.13	0.8473	Pt-UBQ1.2
AT4G15000			Ribosomal L27e protein family ...		Potri.016G019000 [exp]	18.38	0.8407	RPL27.1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	19.36	0.8138
AT5G48760			Ribosomal protein L13 family p...		Potri.017G054600 [exp]	24.43	0.8371	RPL13.2
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.007G007500 [exp]	27.12	0.8035
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	29.69	0.7675	Pt-FUT1.2
AT2G37190			Ribosomal protein L11 family p...		Potri.018G145504 [exp]	33.46	0.8355
AT1G70600			Ribosomal protein L18e/L15 sup...		Potri.006G202300 [exp]	35.84	0.8333	Pt-RPL27.4
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	37.22	0.8153	Pt-WRP15.1
AT2G37190			Ribosomal protein L11 family p...		Potri.018G146600 [exp]	40.09	0.8296	RPL12.2

Compare expression of checked genes

Potri.011G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.