Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34250 909 / 0 SecY protein transport family protein (.1.2) AT1G29310 909 / 0 SecY protein transport family protein (.1) AT1G78720 895 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387600 [exp] 961 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G114900 [exp] 674 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.011G114200 [exp] 480 / 2e-169 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007313 [exp] 946 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10029262 [exp] 946 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Lus10010932 [exp] 946 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 946 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [poplar] [flax] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Potri.011G107900.4 pacid=42780425 polypeptide=Potri.011G107900.4.p locus=Potri.011G107900 ID=Potri.011G107900.4.v4.1 annot-version=v4.1 ATGGGAGGTGGATTTAGGGTGCTTCATCTTGTCAGACCATTTCTGTCATTTCTTCCTGAAGTTCAGAGTGCTGACAGAAAAATTCCGTTTCGTGAGAAGG TCATATACACCGTGATTGCTCTTTTTATTTTCTTGGTGTGCAGTCAACTCCCATTGTATGGCATTCATTCGACAACCGGTGCGGATCCTTTCTACTGGAT GCGTGTTATTCTTGCATCCAACCGTGGTACTGTCATGGAGCTTGGTATCACTCCAATTGTGACATCTGGGCTAGTAATGCAACTGCTTGCTGGCTCAAAG ATCATTGAAGTGGACAACAACGTCCGTGAAGATCGTGCACTGTTAAACGGTGCGCAGAAGTTGCTAGGTATCCTGATAGCTGTTGGTGAAGCGGTGGCAT ATGTGCTCTCAGGGATGTATGGCAGTGTTGGCCAACTTGGGGTAGGAAATGCCATTCTTATCATCATTCAGCTTTGTTTTGCTGGGATCATTGTGATATG TTTGGACGAGCTTCTTCAGAAAGGATATGGTTTAGGCTCTGGAATTTCCCTTTTCATAGCAACCAATATCTGTGAAAACATTATCTGGAAAGCATTTAGT CCAACCACCATCAATAGTGGGCGTGGTGCTGAATTTGAAGGAGCTGTCATTGCTTTATTCCATCTGCTGATAACCCGAACAGACAAAGTTCGTGCTCTCC GAGAGGCATTTTACAGGCAGAATCTTCCAAATGTGACAAATCTTCTCGCTACAGTCTTGATCTTTCTCATTGTCATCTACTTCCAAGGGTTCCGTGTGGT TTTACCTGTGAGGTCAAAGAATGCTCGTGGGCAGCAGGGTTCATATCCAATCAAGCTGTTCTACACCTCTAACATGCCCATTATTTTGCAGTCTGCTCTT GTATCGAACCTGTACTTCATCTCCCAGTTGTTGTACAGGAGGTACAGTGGAAACTTCCTTGTGAATCTTTTGGGCAAATGGAAGGAATCTGAATATTCAG GTGGTCAGTTTGTCCCTGTCGGTGGCCTTGCGTATTATATCACTGCACCCTCAAGCTTAGCTGATATGGCGGCAAATCCTTTCCATGCACTTTTCTATTT TGTGTTTATGTTGTCAGCATGTGCTCTCTTCTCAAAAACTTGGATTGAAGTATCTGGATCATCTGCTAGAGATGTAGCCAAGCAGCTCAAGGAACAACAA ATGGTTATGCCTGGGCATCGCGAGTCCAACTTACAGAAAGAGTTGAACCGTTACATACCCACTGCCGCAGCTTTTGGCGGCATTTGCATTGGTGCACTGA CAGTGTTGGCAGATTTCATGGGAGCTATCGGCTCAGGAACAGGAATACTACTTGCAGTTACAATAATTTATCAGTACTTTGAGACCTTTGAGAAGGAAAA GGCCAGCGAACTTGGCTTCTTTGGTTTCTAA
AA sequence Show only first row Show all	>Potri.011G107900.4 pacid=42780425 polypeptide=Potri.011G107900.4.p locus=Potri.011G107900 ID=Potri.011G107900.4.v4.1 annot-version=v4.1 MGGGFRVLHLVRPFLSFLPEVQSADRKIPFREKVIYTVIALFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSK IIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFS PTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL VSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQFVPVGGLAYYITAPSSLADMAANPFHALFYFVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34250			SecY protein transport family ...		Potri.011G107900 [exp]	0	1
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	3.16	0.8819
AT5G03345			unknown protein		Potri.006G125300 [exp]	7.48	0.8452
AT1G44960			SNARE associated Golgi protein...		Potri.001G070800 [exp]	10.14	0.8014
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	13.19	0.8280
AT1G68680			unknown protein		Potri.011G024500 [exp]	21.67	0.8662
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	23.10	0.8474	RPT1.3
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	26.66	0.8584	Pt-ANT1.1
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Potri.004G226400 [exp]	26.85	0.8472
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Potri.007G013400 [exp]	29.39	0.8344
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.015G028200 [exp]	29.66	0.8567

Compare expression of checked genes

Potri.011G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.