Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53380 531 / 0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 528 / 0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 372 / 3e-125 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT2G45260 332 / 5e-110 Plant protein of unknown function (DUF641) (.1) AT3G60680 218 / 3e-65 Plant protein of unknown function (DUF641) (.1) AT4G34080 199 / 1e-60 Plant protein of unknown function (DUF641) (.1) AT4G33320 185 / 4e-55 Plant protein of unknown function (DUF641) (.1) AT5G58960 166 / 5e-46 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G30380 141 / 1e-36 Plant protein of unknown function (DUF641) (.1) AT2G32130 120 / 3e-32 Plant protein of unknown function (DUF641) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387700 [exp] 825 / 0 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G071000 [exp] 416 / 1e-142 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 415 / 4e-142 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 338 / 1e-112 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 229 / 9e-70 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 221 / 4e-67 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 222 / 7e-67 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 208 / 3e-63 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.019G128300 [exp] 172 / 2e-48 AT2G45260 241 / 2e-75 Plant protein of unknown function (DUF641) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007312 [exp] 382 / 6e-129 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 372 / 2e-125 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 342 / 4e-114 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 342 / 7e-114 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 332 / 5e-110 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 327 / 3e-108 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 233 / 1e-70 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 208 / 3e-62 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 207 / 9e-62 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 207 / 2e-61 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [poplar] [flax] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Potri.011G108000.3 pacid=42782318 polypeptide=Potri.011G108000.3.p locus=Potri.011G108000 ID=Potri.011G108000.3.v4.1 annot-version=v4.1 ATGGATTCAGTAAAACCATCCGCCGTGACTCCTAGGAAGAGTAAATTTGCACGCACTGTAGCCAAAGTTCTTCATCTTCGAGCAGCAAGTGGGATTGCTC CTGTTGACGGGGTTCAGAAAGTTGTGGCCCAAGAAAAGGTAAAGGATGAGAAGCATCGCCATAAAAGCGCAGCTAGCCGGCCGCAATCATTTGACATTAA TGATAACGATGAACATGAAAAAAGCTTGGCCTTGGAAGTACTCGTTGCCAAACTGTTTGCTAGCTTATCATCTGTAAAAGCTGCATATGCTCAGTTACAG TATGCTCAGTCTCCTTATGATGCTGATGGGATTCAAGGAGCTGACCATTTGGTAGTCTCTGAGTTGAAGAATCTGTCTGATTTGAAGCAGTGCTACATAA AAAAACAGTTTGATCCTTCTCCTGATACCTCTCTGGTTTTGGCTGACATTCAGGAGCAGAAGAGTCTTTCAAAGATCTATGAGATAATGGGGAAGAAATT GGAGTCTCAGTTGAGGCTCAAGGAGTCCGAGATCACGTATCTGAGAGAAAAAATGGAAGAATCTAATAGACAAAACCGATTACTTGAGAAGAGGTTAAAT CAAAGTGGACATTTATCTATGCCTGGTAATCTACGGCAATCAGGCTTAAGTCCCAGCCATTTCATTACAGTTCTACGACACACAGACAAGTCCATTCGAA GCTTTGTCAAATTGATGATCGATGAGATGAAATCTGCTGGTTGGGATCTAGATGCTGCCGCCAAATCTATTGTATCCGATGTGGCCTACTGGAGAGCAGA TGACAAATGTTTTGCATTTGAAAGCTTTGTTAGCAGAGAGATGTTCGATGGTTTCCATTTGCCTAATTTCTCTCTACAGGAAGAATCTCTACCAGAGAAA AAGAATCAGCAACAGTTGTTTTTCAGGAGATTCACTGAACTGAAATCCGCGAAAGCAACTGAATACATTGCCCACAAGCCCAAATCAACATTTGCAAAAT TTTGTCGTGCCAAGTATTTGCAACTTATTCACCCCCAGATGGAAACGTCCTTTTTAGGCAATCTGAGCCAAAGAAGCCTCGTGAATTCAGGTGAATTTCC TGACAATAGTTTTTTTGCCACATTTGTTGAAATGGCTAGGCGGGTCTGGCTTCTACATTGCCTGGCCTTTTCTTTCGACCCAGAAGCCTCAATCTTTCAA GTCCGTAGAGGGTGTCGTTTCTCTGAAGTTTACATGGAATGTGTTGCCGAAGATGCACTTCTTTCAGAAAATGCACCGGAAGCTGATCCACCAGTGGCAT TCACCGTAGTTCCTGGGTTTAGGATTGGTAAAACTGTTATACAGTGCCAGGTCTATCTCTCTCAGCTCCATACCAAGGTAAACCGTTGA
AA sequence Show only first row Show all	>Potri.011G108000.3 pacid=42782318 polypeptide=Potri.011G108000.3.p locus=Potri.011G108000 ID=Potri.011G108000.3.v4.1 annot-version=v4.1 MDSVKPSAVTPRKSKFARTVAKVLHLRAASGIAPVDGVQKVVAQEKVKDEKHRHKSAASRPQSFDINDNDEHEKSLALEVLVAKLFASLSSVKAAYAQLQ YAQSPYDADGIQGADHLVVSELKNLSDLKQCYIKKQFDPSPDTSLVLADIQEQKSLSKIYEIMGKKLESQLRLKESEITYLREKMEESNRQNRLLEKRLN QSGHLSMPGNLRQSGLSPSHFITVLRHTDKSIRSFVKLMIDEMKSAGWDLDAAAKSIVSDVAYWRADDKCFAFESFVSREMFDGFHLPNFSLQEESLPEK KNQQQLFFRRFTELKSAKATEYIAHKPKSTFAKFCRAKYLQLIHPQMETSFLGNLSQRSLVNSGEFPDNSFFATFVEMARRVWLLHCLAFSFDPEASIFQ VRRGCRFSEVYMECVAEDALLSENAPEADPPVAFTVVPGFRIGKTVIQCQVYLSQLHTKVNR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	0	1
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	4.69	0.8828
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	5.00	0.8412	Pt-AAT1.1
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	6.00	0.8494	Pt-PK1.1
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	6.00	0.8871
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	10.58	0.8182
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	11.66	0.8342
					Potri.017G106601 [exp]	16.88	0.8175
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Potri.006G092400 [exp]	18.97	0.7935
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	22.04	0.8541
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	23.10	0.8402

Compare expression of checked genes

Potri.011G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.