Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G108200 [exp] 919 / 0 ND / Potri.001G387900 [exp] 732 / 0 ND / Potri.001G388801 [exp] 712 / 0 ND / Potri.001G388450 [exp] 705 / 0 ND / Potri.001G388200 [exp] 704 / 0 ND / Potri.001G388600 [exp] 699 / 0 ND / Potri.001G388100 [exp] 655 / 0 ND / Potri.011G047300 [exp] 652 / 0 ND / Potri.001G388900 [exp] 610 / 0 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038309 [exp] 523 / 0 ND / Lus10022836 [exp] 452 / 3e-155 ND / Lus10029057 [exp] 417 / 3e-139 ND / Lus10005392 [exp] 405 / 6e-135 ND / Lus10024122 [exp] 401 / 2e-133 ND / Lus10006341 [exp] 378 / 2e-126 ND / Lus10024121 [exp] 368 / 5e-120 ND / Lus10008536 [exp] 353 / 4e-118 ND / Lus10023559 [exp] 353 / 5e-115 ND / Lus10005393 [exp] 322 / 7e-104 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0205 [poplar] [flax] Di-copper PF00264 [poplar] [flax] Tyrosinase Common central domain of tyrosinase CL0205 [poplar] [flax] PF12142 [poplar] [flax] PPO1_DWL Polyphenol oxidase middle domain CL0122 [poplar] [flax] UTRA PF12143 [poplar] [flax] PPO1_KFDV Protein of unknown function (DUF_B2219)
Representative CDS sequence Show only first row Show all	>Potri.011G108300.1 pacid=42782419 polypeptide=Potri.011G108300.1.p locus=Potri.011G108300 ID=Potri.011G108300.1.v4.1 annot-version=v4.1 ATGTCCACCTTATCTTTCAGTCCTTTCTTTCCAAAACCACAGCATGTTACCAAAACCAAAAGGCTGAATCACCCATACGTCCCTAGAGTTTCATGCAAAG CCACAGATGATACACAAAACCCTCCCACGAGAAGAGACGTCCTCATCGGTCTAGGAGGCCTATATAGCGCTACCAATCTTGCTGACCGAACTGCCTTTGC TAAGCCAATCACCCCTCCAGACTTGACCAAATGTGAGTTGGTGGACTTACCAAACCCCGAAAATCCATCAAACTGTTGCACTCCATTACCCAAAAAGATC ATAGACTTCAGACCTCCTTCTCCATTCTCCCCGCTACGCACTAGACGTGCGGCCCATTTAGTTGACGAAGACTACGTCGCCAAATATGCTGAAGCCATTT CCTTAATGAAAAGTCTCCCCGAAGATGATCCACGTAACTTCTACCAACAAGCCAACGTACATTGTGCCTATTGCAATGGTGCCTACGAACAAGTGGGGTT TCCAAAATTAGAAATTGATGTTCATTCCTGTTGGTTCTTCTTTCCTTGGCACAGATACTATCTTTACTTCTATGAAAGAATCTTGGGCAAACTTATTAAT GACCCAACTTTTGCTCTGCCTTTCTGGAACTGGGATTCCCCCAGTGGTATGCAAATGCCTTACATCTTTACCGACCCTAAATCTCCACTCTATGACCAGT TCCGCGACCAGAATCACCAACCTCCTATATTGCTAGATCTTGATTATGGAGCGGGATACCCCAACCCCACAAACGCAAATCAATTATACTCTAGTAATCT TACAGTAATGTACAAGCAAATGGTGTCTGGTGCAGCAAAACCAACACTCTTTTTTGGAAAATCATACCGTGCTGGTGAAGATACTAGTCCTGGAGCTGGG ACGATTGAGACCACCCCTCACAATAATATTCACAGATGGACCGGTGATCCAACTCAAGAAAATAACGAAGACATGGGCAATTTTTACTCAGCTGCGAGAG ATCCAATATTTTTTTGTCATCACTCAAATGTTGACCGAATGTGGACGATATGGAAGACTATACCTGGAGGAACTAGGAGGGATATCAGTGATCCTGATTG GCTTAATTCAGAGTTTCTTTTCTATAATGAGAATGCAGAGCTTGTTCGTTGTAAGGTTAGCGATTGTCTTGACAATACAGGGCTAAGGTATACTTATCAA AATGTTGAAATTCCTTGGCTAGAATCAAAACCAATTCCGAGAAGGTTGGGAAAGAAAGCAGCTGAAACAAAAACTGCATTAACACCGATCACTGCATTCC CTTTAGTCTTAGACAAAACCATAGTCACTGTAGTTTCAAGACCAAAGAAATCAAGAAGCAGGAAAGAGAAAGAAGAGGAAGATGAAGTTTTAGTGATAGA AGGGATAGAATACGACAAAGGCAAATTCGTGAAGTTTGACGTGTTCATAAATGATGACGTTGAGATGCCTTCTAAACCAGAAAATACAGAGTTTGCTGGG AGCTTTGTTAATGTTTCTCATAAGCATGCGAAGAAGTCCAAGACAAGATTGATATTGGGGATTACAGAATTGTTGGAAGACTTAGAAAGTGATGGTGATG ATAGCATTGTGGTGGCTTTGGTGCCCAGGTCTAATAGTGTTAGTGATCCTGTTGTCATCTCTGGCGTTAAGATTGAGTTTGTTAAAGAGTGA
AA sequence Show only first row Show all	>Potri.011G108300.1 pacid=42782419 polypeptide=Potri.011G108300.1.p locus=Potri.011G108300 ID=Potri.011G108300.1.v4.1 annot-version=v4.1 MSTLSFSPFFPKPQHVTKTKRLNHPYVPRVSCKATDDTQNPPTRRDVLIGLGGLYSATNLADRTAFAKPITPPDLTKCELVDLPNPENPSNCCTPLPKKI IDFRPPSPFSPLRTRRAAHLVDEDYVAKYAEAISLMKSLPEDDPRNFYQQANVHCAYCNGAYEQVGFPKLEIDVHSCWFFFPWHRYYLYFYERILGKLIN DPTFALPFWNWDSPSGMQMPYIFTDPKSPLYDQFRDQNHQPPILLDLDYGAGYPNPTNANQLYSSNLTVMYKQMVSGAAKPTLFFGKSYRAGEDTSPGAG TIETTPHNNIHRWTGDPTQENNEDMGNFYSAARDPIFFCHHSNVDRMWTIWKTIPGGTRRDISDPDWLNSEFLFYNENAELVRCKVSDCLDNTGLRYTYQ NVEIPWLESKPIPRRLGKKAAETKTALTPITAFPLVLDKTIVTVVSRPKKSRSRKEKEEEDEVLVIEGIEYDKGKFVKFDVFINDDVEMPSKPENTEFAG SFVNVSHKHAKKSKTRLILGITELLEDLESDGDDSIVVALVPRSNSVSDPVVISGVKIEFVKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.011G108300 [exp]	0	1
AT5G17910			unknown protein		Potri.001G249000 [exp]	4.47	0.9562
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124300 [exp]	5.91	0.9000
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012700 [exp]	6.92	0.8998
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.019G040200 [exp]	7.93	0.8905
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	10.90	0.8428	GA2ox5,Pt-GA2.3
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	10.95	0.7911
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Potri.010G041500 [exp]	12.80	0.7749
AT5G40700			unknown protein		Potri.019G075700 [exp]	12.96	0.8067
					Potri.018G088701 [exp]	21.56	0.8465
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	22.22	0.8554

Compare expression of checked genes

Potri.011G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.