Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53330 484 / 5e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 204 / 7e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 190 / 2e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 182 / 2e-50 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07740 175 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 176 / 9e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 176 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 175 / 5e-48 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 174 / 5e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62914 172 / 6e-48 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103600 [exp] 216 / 2e-64 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 196 / 2e-57 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 197 / 3e-56 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 181 / 2e-51 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 184 / 4e-51 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G031600 [exp] 178 / 6e-50 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G204100 [exp] 175 / 1e-49 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 179 / 2e-49 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 177 / 1e-48 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042452 [exp] 541 / 0 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026218 [exp] 537 / 0 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 205 / 4e-60 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005989 [exp] 185 / 2e-52 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 187 / 5e-52 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 186 / 2e-51 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018019 [exp] 182 / 6e-51 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 183 / 2e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 182 / 2e-50 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 182 / 2e-50 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.011G108500.1 pacid=42781038 polypeptide=Potri.011G108500.1.p locus=Potri.011G108500 ID=Potri.011G108500.1.v4.1 annot-version=v4.1 ATGAACCCATCAAGACCCATCACCCCTTTCAGGCTAGCCTCTCTTCTTCGTCTCCAAAAAGACCCTAAACTCGCTCTTCAACTCTTTAAAAATCCAAACC CAAAAACCCCTTCGAAACCCTTTCGCTACTCTCTTCTCTCTTATGACCTCATCATTACCAAGCTTGGCCGTGCTAAAATGTTCAATGAAATGCAAGAAAT CCTTGCCCAACTCAAAGAAGAAACCCTTTTCACCCCTAAAGAGGCTCTCTTTTGCGACATAATCAATTTCTATGGCCGTGCTCGCCTCCCTGAAAATGCA CTCAAACTGCTCGTTGAATTGCCTTCGTTTCGTGTCCAAAGGACGGTAAAATCGTATAATTCCTTGCTAAGTGTATTCTTGATGTGCAAGGATTTTGATA AAATGAGGGAACTTTTTGTGGGTATCGAGAAATTGGGGAAAGCAGATGCCTGTACCTATAATTTATTGATTCGTGGGTTTTGTGCGAGTGGGAGATTAGA TGATGCGTCCAAGGTGTTTGATGAAATGACTAATAGAGGTGTTAGTCCTAATGTGATTACATTTGGTAATTTGATTTATGGGTTTTGTTTGCATTTGAGG TTGAAGGAGGCTTTTAAGCTGAAGACGGATATGGTTAAGGTCTATAGGGTGTATCCTAATGCTTATATTTATGCGTCATTGATTAAGGGGGTTTGTAAGA ATGGCGAGTTAAGTTTAGCTTTTAGGCTTAAGAAGGAGATGATTAGAAATAAAATTGAGTTGGATCCAGCAATTTATTCTACTTTGATTAGTGGGCTTTT TAAGGCTGGGAGAAAGGAAGAGGCTTTAGGTGTTTGGGAGGACATGAAAGAACGTGGGTACAAACCCGATACTGTAACTTACAATGTGATTATTAATTTG TTTTGTAAGGATAAGGATTTTGAAGCAGCTTATAGATTGTTGGATGAGATGGTGGAGAAAGGGTGTAAGCCTGATGTTATCAGCTACAATGTGATACTTC GAGAACTGTTTGAAGAAGGGAAAAGGGGTGAAGCAAATGATTTATTTGAAGATATGCCAAGACGTGGCTGTGCTCCTGATGTTGTTTCCTATAGGATTCT TTTTGACGGGTTTTGCAATGGGATGCAGTTCAAGGAAGCAGCATTTATTTTGGATGAAATGATTTTCAAGGGTTTTGTTCCTTGTTCTGCCAGTATATGC AAGTTTGTTAATAGGTTGTGTGAGGGAAAGAATGAAGATTTGTTAAGGTCAGCTTTTAATACTCTGGAAAAGGGAAAACTTGTCAATGTAGATTTATGGA GGATGGCTGTTGCCATGGTATTCAAGGATGATAAACTCTCTAGTTCATTTAACCTCGTTGATAGTTTGATAGATGTTATGAACTAA
AA sequence Show only first row Show all	>Potri.011G108500.1 pacid=42781038 polypeptide=Potri.011G108500.1.p locus=Potri.011G108500 ID=Potri.011G108500.1.v4.1 annot-version=v4.1 MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKTPSKPFRYSLLSYDLIITKLGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENA LKLLVELPSFRVQRTVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVSPNVITFGNLIYGFCLHLR LKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVIINL FCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGFVPCSASIC KFVNRLCEGKNEDLLRSAFNTLEKGKLVNVDLWRMAVAMVFKDDKLSSSFNLVDSLIDVMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	0	1
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.010G086900 [exp]	3.74	0.9091
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	4.35	0.9153
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	5.00	0.9025
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	5.74	0.8907
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	9.32	0.9062
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	10.58	0.9012
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	12.96	0.9013
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	14.83	0.9048
AT1G28690			Tetratricopeptide repeat (TPR)...		Potri.004G054000 [exp]	16.09	0.8671
AT3G63390			unknown protein		Potri.002G047400 [exp]	18.38	0.8776

Compare expression of checked genes

Potri.011G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.