Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78770 908 / 0 APC6 anaphase promoting complex 6 (.1) AT3G04240 69 / 5e-12 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16320 61 / 2e-09 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 54 / 3e-07 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT3G11540 53 / 4e-07 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G63200 52 / 1e-06 tetratricopeptide repeat (TPR)-containing protein (.1) AT5G56290 50 / 3e-06 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389300 [exp] 1057 / 0 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.001G389500 [exp] 303 / 4e-101 AT1G78770 244 / 1e-78 anaphase promoting complex 6 (.1) Potri.013G051400 [exp] 68 / 1e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 64 / 2e-10 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G086300 [exp] 63 / 4e-10 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 62 / 6e-10 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.016G075700 [exp] 52 / 7e-07 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G473100 [exp] 52 / 1e-06 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G170000 [exp] 50 / 5e-06 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030525 [exp] 935 / 0 AT1G78770 847 / 0.0 anaphase promoting complex 6 (.1) Lus10012876 [exp] 884 / 0 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10003576 [exp] 59 / 6e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 58 / 2e-08 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 58 / 2e-08 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 53 / 4e-07 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042152 [exp] 52 / 1e-06 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10017009 [exp] 47 / 4e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 47 / 4e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10013661 [exp] 47 / 5e-05 AT5G63200 801 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF12895 [poplar] [flax] ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.011G108800.1 pacid=42781720 polypeptide=Potri.011G108800.1.p locus=Potri.011G108800 ID=Potri.011G108800.1.v4.1 annot-version=v4.1 ATGAGAGAAGAGCAGATAGAGAAGCTTCGAGGGGTAGTGCGTGACTGTGTGAGCAAGCACTTATACTCCTCTGCCATTTTCTTCGCCGACAAAGTCGCCG CCTTCACCGACGATCCCGCTGACATCTACATGCAAGCTCAGGCTCTCTTCCTCGGCCGCCACTACCGCCGCGCCTACCACCTCCTCAACGCCTCCAAAAT AGTCCTTCGCGACCTCCGTTTCCGCTACCTCGCCGCCAAATGCCTCGAGGAATTGAAAGAGTGGGACCAGTGTTTGTTAATGCTTGGTGATGCAAAAGTT GATGAACATGGAAATGTATATGACACTAAAGACTGTAATGTTATGTACTTAGATAAGGATAGTGAAGATCGCGAGATCAATATTTCTTCAGCAATATGTT TTCTAAGAGGTAGGGCTTATGAAGCATTGGAAAATCGTGCTCTAGCTCGACATTGGTACAAAGCTGCTATCAAGGCTGATCCTTTATGTTATGAGGCTTT GGAATGCCTTATTGAAAATCACATGCTCACATTTGAAGAAGAAACAAGTCTACTTTCCTCCTTGCAATTTGGTCCTGAAGATAGGTGGCTCTCTTCATTC TACTCTTGCTTGATAAAAAAGTATGACAAAGAGTGTGTCATAGAAGCCAAATTCAGAGAAGTTGAAAAAGAAAGCTGCAATAGCAATCCTTCTAGCCCTT CTTTCATGCATACACTAAAAAACAACACCGATCTTTTGGCTTGTAAAGCAGAGTACTTCAATCAGTGTGGTGAATATCAGAAATGCTTTGAACTAACTTC AGATCTGCTTGAGAAGGACCCTTTTCATTTGAAATGTACATTGGTACATTTAGCAGCTGCTGTGGAGCTTGGAAATTCAAATGAGCTGTATCTCATGGCA TCTAACTTGGTGAAGGATTATCCTCAAAAGACTCTCTCATGGTTTGCTGTTGGCTGTTACTACTACTGTATCAAGAAGTATGATCAATCACGGCGTTATT TCAGCAAGGCTACCAGTCTAGATGGAACCTTTGCACCTGCTTGGATTGGCTTTGGGAATGCTTATGCTGCTCAAGAAGAGGGTGATCAAGCAATGTCGGC ATATCGCACCGCTGCTCGTTTATTCCCAGGGTGTCATTTGCCAACTTTGTATATTGGGATGGAATACATGCGAACTCACAGCTATAAGCTTGCTGAGCAG TTTTTCATGCAGGCAAAGACAATTTGCCCTTCAGATCCACTTGTATACAATGAACTTGGTGTTGTTGCTTATAATATGAAGGAGTACAACAAGGCAGTGT TGTGGTTTGAGAAGACTTTGAAGCACATTCCTTCGTTGAGTCAATTGTGGGAACCAACTGTCATTAATCTTGCCCATGCCTACAGAAAGTTAAAGATTTA CCATGAAGCAATTTCATGCTATGAGAGAGCACTTGCATTATCAACTAGAAGCTTGAGTACTTATGCTGGTCTTGCATACACTTATCATTTGCAGGATAAC TTTACTGCTGCAATTACATGCTACCACAAGGCTTTATGGCTGAAACCGGATGATCAATTTTGCACTGAAATGTTGAGCCTGGCACTTGTAGATGAAGGTC GTCGAGGCATCGACCCCAAAATTGAATTTCGATGA
AA sequence Show only first row Show all	>Potri.011G108800.1 pacid=42781720 polypeptide=Potri.011G108800.1.p locus=Potri.011G108800 ID=Potri.011G108800.1.v4.1 annot-version=v4.1 MREEQIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTDDPADIYMQAQALFLGRHYRRAYHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLLMLGDAKV DEHGNVYDTKDCNVMYLDKDSEDREINISSAICFLRGRAYEALENRALARHWYKAAIKADPLCYEALECLIENHMLTFEEETSLLSSLQFGPEDRWLSSF YSCLIKKYDKECVIEAKFREVEKESCNSNPSSPSFMHTLKNNTDLLACKAEYFNQCGEYQKCFELTSDLLEKDPFHLKCTLVHLAAAVELGNSNELYLMA SNLVKDYPQKTLSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFAPAWIGFGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMEYMRTHSYKLAEQ FFMQAKTICPSDPLVYNELGVVAYNMKEYNKAVLWFEKTLKHIPSLSQLWEPTVINLAHAYRKLKIYHEAISCYERALALSTRSLSTYAGLAYTYHLQDN FTAAITCYHKALWLKPDDQFCTEMLSLALVDEGRRGIDPKIEFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	0	1
AT3G07140			GPI transamidase component Gpi...		Potri.014G190600 [exp]	1.41	0.7849
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	12.12	0.6856
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	13.26	0.7320
AT2G34560			P-loop containing nucleoside t...		Potri.011G085200 [exp]	14.24	0.7115
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	14.69	0.7504
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	14.73	0.7534
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	14.83	0.7603
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	16.97	0.7186
AT1G53760			unknown protein		Potri.001G161800 [exp]	18.89	0.7219
AT5G01030			Protein of unknown function (D...		Potri.006G093600 [exp]	22.71	0.6912

Compare expression of checked genes

Potri.011G108800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.