Plant FIBer expression Database

Potri.011G108900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78780 365 / 3e-129 pathogenesis-related family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G389800
[exp]
461 / 3e-167 AT1G78780 361 / 9e-128 pathogenesis-related family protein (.1.2.3.4)
Potri.001G389400
[exp]
434 / 3e-156 AT1G78780 352 / 4e-124 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188300
[exp]
260 / 7e-88 AT1G78780 251 / 2e-84 pathogenesis-related family protein (.1.2.3.4)
Potri.005G188400
[exp]
256 / 2e-86 AT1G78780 249 / 1e-83 pathogenesis-related family protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037316
[exp]
362 / 9e-128 AT1G78780 337 / 9e-118 pathogenesis-related family protein (.1.2.3.4)
Lus10039018
[exp]
294 / 6e-101 AT1G78780 301 / 6e-104 pathogenesis-related family protein (.1.2.3.4)
Lus10035732
[exp]
247 / 2e-83 AT1G78780 249 / 2e-85 pathogenesis-related family protein (.1.2.3.4)
Lus10029763
[exp]
240 / 6e-80 AT1G78780 228 / 3e-75 pathogenesis-related family protein (.1.2.3.4)
Lus10018919
[exp]
236 / 3e-78 AT1G78780 239 / 1e-79 pathogenesis-related family protein (.1.2.3.4)
Lus10027315
[exp]
165 / 1e-51 AT1G78780 171 / 3e-55 pathogenesis-related family protein (.1.2.3.4)
Lus10042792
[exp]
110 / 1e-30 AT1G78780 115 / 1e-33 pathogenesis-related family protein (.1.2.3.4)
Lus10028620
[exp]
55 / 6e-10 AT1G78780 67 / 1e-15 pathogenesis-related family protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.011G108900.2 pacid=42780562 polypeptide=Potri.011G108900.2.p locus=Potri.011G108900 ID=Potri.011G108900.2.v4.1 annot-version=v4.1
ATGGCGACAGCAGAAGAAGCTTTGATTAAGAAATCAGGAGATATCTACAGATCTATCTTGCATGACGAAGCTGAGAATACCACGCAGTGGAGGCATGGTG
GTCCTCCCGTATATGATTCCGTCAACCAGCTCTTCGAAGAAGGCCGGACCAAGGAATGGCCAAAAGGGTCTCTAGAAGAAGTAGTGCAAAATGCTATAAA
GTCTTGGGAAATGGAACTCTCACACAAGACTCGTTTACAGGACTTCAAGACCATTAATCCTGACAAATTCAAGCTCATTGTTAATGGAAGAGAGGGTTTA
TCAGGAGAAGAAACGCTTAGGCTTGGGAGCTACAATGCTTTATTGAAAAACTCTCTACCGAAGGAATTTCAGTACTACAAAGCAGATGAAGAAACCTTTG
AATCATCCCATGATGCCTTTCGATCTGCCTTCCCTCGAGGATTCGCATGGGAAGTGCTGAATGTATATTCAGGACCTCCTGTGATTTCTTTCAAATTCAG
GCATTGGGGTTTCTTTGAAGGACCTTTCAAAGGCCATGCTCCTACTGGAGAGAAGGTTGAGTTCCATGGCCTCGGAGTCCTCAAGATAGATGAATCTCAA
AGGGCAGAAGATGTGGAGATTTACTATGACCCAGCTGAGTTATTTGGAGGGCTCCTGAAAGGACCGCTGATCTCACCATCCCAATCAGAATCAGAAGATA
ACACTGCCACCGTCGCAGCAGCAACACATGGCTGTCCGTTTTCCAAATAA
AA sequence
>Potri.011G108900.2 pacid=42780562 polypeptide=Potri.011G108900.2.p locus=Potri.011G108900 ID=Potri.011G108900.2.v4.1 annot-version=v4.1
MATAEEALIKKSGDIYRSILHDEAENTTQWRHGGPPVYDSVNQLFEEGRTKEWPKGSLEEVVQNAIKSWEMELSHKTRLQDFKTINPDKFKLIVNGREGL
SGEETLRLGSYNALLKNSLPKEFQYYKADEETFESSHDAFRSAFPRGFAWEVLNVYSGPPVISFKFRHWGFFEGPFKGHAPTGEKVEFHGLGVLKIDESQ
RAEDVEIYYDPAELFGGLLKGPLISPSQSESEDNTATVAAATHGCPFSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78780 pathogenesis-related family pr... Potri.011G108900
[exp]
0 1
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.016G034875
[exp]
5.74 0.7344
AT1G43245 SET domain-containing protein ... Potri.005G193701
[exp]
6.92 0.7280
AT3G53400 unknown protein Potri.016G088900
[exp]
8.00 0.6781
AT4G28088 Low temperature and salt respo... Potri.018G105100
[exp]
11.22 0.7349
AT1G04290 Thioesterase superfamily prote... Potri.004G134132
[exp]
15.65 0.7216
AT4G04830 ATMSRB5 methionine sulfoxide reductase... Potri.008G198600
[exp]
25.65 0.7055 PtrMsrB3
AT1G11440 unknown protein Potri.011G032700
[exp]
29.34 0.6973
AT2G20830 transferases;folic acid bindin... Potri.013G145700
[exp]
34.00 0.6998
AT1G16445 S-adenosyl-L-methionine-depend... Potri.007G069400
[exp]
36.78 0.7153
AT2G37040 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) Potri.006G126800
[exp]
36.94 0.7038 PAL3,Pt-PAL1.2

Potri.011G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.