Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78800 663 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT2G40190 59 / 4e-09 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) AT5G37180 53 / 2e-07 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT1G73370 53 / 2e-07 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G10120 52 / 4e-07 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G49190 52 / 4e-07 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT4G02280 52 / 7e-07 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G20830 48 / 1e-05 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 47 / 3e-05 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT1G75420 44 / 0.0002 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393000 [exp] 514 / 0 AT1G78800 427 / 5e-150 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G081300 [exp] 59 / 5e-09 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 57 / 2e-08 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.002G202300 [exp] 52 / 7e-07 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G025100 [exp] 51 / 1e-06 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.012G037200 [exp] 51 / 1e-06 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 50 / 2e-06 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.006G136700 [exp] 50 / 2e-06 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 49 / 7e-06 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015797 [exp] 678 / 0 AT1G78800 652 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037008 [exp] 666 / 0 AT1G78800 665 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10001468 [exp] 60 / 2e-09 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10028977 [exp] 56 / 3e-08 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008975 [exp] 52 / 4e-08 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10013417 [exp] 55 / 6e-08 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10041979 [exp] 51 / 1e-06 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 51 / 2e-06 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10012454 [exp] 50 / 2e-06 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10020506 [exp] 50 / 2e-06 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF13579 [poplar] [flax] Glyco_trans_4_4 Glycosyl transferase 4-like domain CL0113 [poplar] [flax] GT-B PF13692 [poplar] [flax] Glyco_trans_1_4 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Potri.011G109000.1 pacid=42780567 polypeptide=Potri.011G109000.1.p locus=Potri.011G109000 ID=Potri.011G109000.1.v4.1 annot-version=v4.1 ATGGAGAGAAAATTAAAGATTGCCATCATTCATCCAGATCTTGGTATAGGTGGAGCCGAAAGATTAATAGTCGATGCTGCCGTTGAACTTGTCTCCCATG GCCACGATGTTCATATTTTTACTGCTCATCATGATAAAAACCGATGCTTTGAAGAAACTGTTTCCGGTACCTTCCCGGTTACTGTATATGGTTCTTTCCT GCCTCGGCATGTATTCTACCGTTTTCATGCCTTATGCGCGTATTTGCGGTGCATTTTCGTTGCCCTTTGCGTGTTATTCCTGTGGCCATCTTTTGATGTT ATATTGGCAGATCAGGTTTCTGTTGTCATCCCACTTTTGAAACTTAAAAAATCAATGAAGGTGGTTTTTTATTGTCATTTTCCGGATTTGTTACTTGCTC ATCATACAACTGTTCTCCGAAGGTTGTACAGGAAACCCATTGACTTTGTAGAAGAAATTACAACGGGCATGGCTGATATGATACTTGTTAACAGCAAATT CACTGCATCTACCTTTGCGAATACATTCAAGCGTCTTCATGCACGGGGAATTCGACCTGCTGTTCTTTATCCTGCTGTTAACGTGGACCAATTCGATGAA CCTCATTCTTATAAGTTGAATTTTCTCTCGATAAATCGCTTCGAAAGGAAAAAGAACATAGAATTGGCAGTTTCTGCCTTTGCCAGACTTCACACCCTTG AGGAACATGCCCTTCAAAGTCAAAAACTAAATGAAGCTACTTTGACCATTGCTGGTGGATATGATAGTCGACTGCGAGAGAATGTTGAATACCTGGATGT ACTTAAACACCTGGCTGCAAGGGAAGGAGTCTCATCTCGGATTAGCTTCGTTACGTCCTGCTCAACAGCTGAGAGAAATAAACTTCTTTCACAGTGCCTA TGTGTCATTTATACTCCAAAGGATGAGCACTTTGGCATCGTCCCATTGGAGGCAATGGCAGCCCATAAGCCTGTAATTGCATGCAATAGTGGGGGCCCTG TGGAGACTGTTAAGGATGCAGAAACAGGATTTCTTTGTGACCCTACCCCTGAAGATTTCTCTTTGGCGATGGCTAAACTCATTCAGGATCCTCAGATGGC AAGCAGAATGGGTGGAGAGGCAAGGAAGCATGTTGCTGAGTCATTCTCAACAAAAACTTTTGGCCAGCATTTGAATCAATATCTCATGAGCATTACTGGC AGTAAAGAAGATTGA
AA sequence Show only first row Show all	>Potri.011G109000.1 pacid=42780567 polypeptide=Potri.011G109000.1.p locus=Potri.011G109000 ID=Potri.011G109000.1.v4.1 annot-version=v4.1 MERKLKIAIIHPDLGIGGAERLIVDAAVELVSHGHDVHIFTAHHDKNRCFEETVSGTFPVTVYGSFLPRHVFYRFHALCAYLRCIFVALCVLFLWPSFDV ILADQVSVVIPLLKLKKSMKVVFYCHFPDLLLAHHTTVLRRLYRKPIDFVEEITTGMADMILVNSKFTASTFANTFKRLHARGIRPAVLYPAVNVDQFDE PHSYKLNFLSINRFERKKNIELAVSAFARLHTLEEHALQSQKLNEATLTIAGGYDSRLRENVEYLDVLKHLAAREGVSSRISFVTSCSTAERNKLLSQCL CVIYTPKDEHFGIVPLEAMAAHKPVIACNSGGPVETVKDAETGFLCDPTPEDFSLAMAKLIQDPQMASRMGGEARKHVAESFSTKTFGQHLNQYLMSITG SKED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78800			UDP-Glycosyltransferase superf...		Potri.011G109000 [exp]	0	1
AT2G04940			scramblase-related (.1)		Potri.015G079500 [exp]	1.41	0.8216
AT4G34270			TIP41-like family protein (.1)		Potri.001G298500 [exp]	13.03	0.7889
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	27.38	0.7345
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	29.73	0.7200
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	34.98	0.7496
AT5G49540			Rab5-interacting family protei...		Potri.008G102200 [exp]	36.05	0.7511
AT1G12390			Cornichon family protein (.1)		Potri.001G116100 [exp]	36.66	0.7433
AT5G15880			unknown protein		Potri.017G110300 [exp]	52.76	0.7307
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Potri.013G077700 [exp]	58.48	0.7422
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	61.82	0.6992

Compare expression of checked genes

Potri.011G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.