Plant FIBer expression Database

Potri.011G109100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16916 79 / 3e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032325
[exp]
61 / 3e-14 AT1G16916 65 / 4e-16 unknown protein
Lus10024703
[exp]
61 / 2e-13 AT1G16916 66 / 3e-15 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G109100.3 pacid=42780307 polypeptide=Potri.011G109100.3.p locus=Potri.011G109100 ID=Potri.011G109100.3.v4.1 annot-version=v4.1
ATGACAATAGAAGAGGCAGCGGCAGGCCCTGCCGGCCCTAAGGTTCTCCGTCTGCTCTACTTTGTCGGCGCTGGATTTATTTGCACAGTTGGAATCAACA
AGTGGAGAGAAATCGAGCGAAAATCAATCCTCGAACAACAGCAGCAAGAGAAGAAGATGAAGAGCGATTTTCTGCCTCGAAGCTCCACAAATTCCGTGCA
GAAGGCCATCAAATGA
AA sequence
>Potri.011G109100.3 pacid=42780307 polypeptide=Potri.011G109100.3.p locus=Potri.011G109100 ID=Potri.011G109100.3.v4.1 annot-version=v4.1
MTIEEAAAGPAGPKVLRLLYFVGAGFICTVGINKWREIERKSILEQQQQEKKMKSDFLPRSSTNSVQKAIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16916 unknown protein Potri.011G109100
[exp]
0 1
AT3G04680 CLPS3 CLP-similar protein 3 (.1.2) Potri.017G077200
[exp]
10.53 0.6283
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Potri.016G093944
[exp]
14.35 0.6284
AT5G60390 GTP binding Elongation factor ... Potri.010G218600
[exp]
14.83 0.6487
AT5G62530 ATP5CDH, ALDH12... ARABIDOPSIS THALIANA DELTA1-PY... Potri.015G064200
[exp]
22.13 0.6156 FIS1.3
AT1G61700 RNA polymerases N / 8 kDa subu... Potri.006G136300
[exp]
22.58 0.6207
AT4G33100 unknown protein Potri.006G224400
[exp]
38.30 0.6080
AT1G67325 Ran BP2/NZF zinc finger-like s... Potri.001G056000
[exp]
49.95 0.5600
AT5G60390 GTP binding Elongation factor ... Potri.010G219500
[exp]
55.62 0.5983
AT1G22970 unknown protein Potri.008G126400
[exp]
62.99 0.5773
AT1G26520 Cobalamin biosynthesis CobW-li... Potri.008G094100
[exp]
64.45 0.5780

Potri.011G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.