Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53320 504 / 5e-180 TUB AtTLP7 tubby like protein 7 (.1) AT2G47900 343 / 4e-116 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 334 / 1e-112 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G25280 325 / 2e-108 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 317 / 3e-105 TUB AtTLP1 tubby like protein 1 (.1.2) AT3G06380 308 / 8e-103 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 309 / 2e-102 TUB AtTLP5 tubby like protein 5 (.1) AT1G47270 304 / 9e-101 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 293 / 1e-96 TUB AtTLP11 tubby like protein 11 (.1) AT1G16070 57 / 1e-08 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390200 [exp] 613 / 0 AT1G53320 516 / 0.0 tubby like protein 7 (.1) Potri.010G031000 [exp] 359 / 1e-122 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.008G195200 [exp] 358 / 3e-122 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192300 [exp] 343 / 6e-116 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 343 / 1e-115 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 342 / 2e-115 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G228500 [exp] 341 / 4e-115 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 334 / 2e-112 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 332 / 1e-111 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012803 [exp] 363 / 1e-124 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10033977 [exp] 363 / 1e-123 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10034106 [exp] 337 / 3e-113 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10029780 [exp] 333 / 2e-111 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10018884 [exp] 332 / 2e-111 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10028579 [exp] 332 / 5e-111 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 332 / 5e-111 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10010645 [exp] 318 / 6e-106 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10014299 [exp] 318 / 7e-106 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10033208 [exp] 314 / 9e-105 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0395 [poplar] [flax] Tubby_C PF01167 [poplar] [flax] Tub Tub family
Representative CDS sequence Show only first row Show all	>Potri.011G109300.1 pacid=42781536 polypeptide=Potri.011G109300.1.p locus=Potri.011G109300 ID=Potri.011G109300.1.v4.1 annot-version=v4.1 ATGTCGCTGAGAAGATCGATTTTATCGCGAAGGTTCTCGAGATCCTTTAATAACCAGAACAGAAACGAACGAAATGCAGTGGAATCGGGGCGACTCGGTG GTGAGTTATGGGCTGAGTCGGATGGGTGGGGGAGTATGTTACCTGAGCTGTTAGGAGAAATAATAAAACGAGTTGAGGAGAGTGAGGATCGGTGGCCTCA GAGACAAAGCGTCGTCGCTTGTGCTTGTGTTTGTAAGAAATGGAGAGATGTTACCAAAGACATCGTCAAGTCTCTTCCTAATAGTAGTAGTAGTACTAAT AATGCAAGTCCTGGCAAAATTACTTTCCCTTCTTGCCTTAAACAGCCAGGTCCACGTGACTTGCCCCATCAGTGTCTTATTAAACGAAATAAGAAGACTT CAACATTTTACCTATATCTTGCTCTTACTCCATCATTTATGGATAAGGGGAAGTTTCTTCTAGCAGCACGGAGGTATAGGCAAGGTGCTCACACAGAGTA TATCATCTCACTCGATGCTGATGAATTATCCCAAGGAAGTAATGCTTATGTTGGAAAGTTAAGTTCGGACTTCCTCGGTACCAACTTCACAATCTTTGAC AGCCAGCCACCACACAGTGGTGCAAAGCCCTCGAGTAGCAGAGCTAGCCGGCGATTTGCAAGCAAGCAAATAAGCCCTCAAGTTCCAGCAGGCAATTTTG AGGTTGGGCAGGTCTCTTATAAATTTAATCTCTTGAAATCTAGAGGTCCAAGGAGGATGGTTTGCTCACTCAAGTGCCCAGTGCTGCAAGAAACAATCAA TGACAAAATTCTTGACAATTCGAAGATGAATGGACTGGAGTCTGCTTCTTCTGGTTGTACAGTTTTGCGGAACAAAGCCCCAAGGTGGCATGAGCATTTG CAATGTTGGTGCTTGAATTTCCATGGTCGGGTAACGGTAGCATCAGTGAAGAACTTTCAACTAGTTGCAACTATGGACCAAAGCCAGCCAGGAGGGAGAG GAGATGAGGATACTGTCCTCCTCCAGTTTGGGAAGGTAGGCGAAGATACTTTCACCATGGATTATAGGCTGCCACTCTCAGCTTTTCAAGCATTTGCCAT ATGCCTTACTAGCTTTGGCACGAAACTGGCATGTGAGTAA
AA sequence Show only first row Show all	>Potri.011G109300.1 pacid=42781536 polypeptide=Potri.011G109300.1.p locus=Potri.011G109300 ID=Potri.011G109300.1.v4.1 annot-version=v4.1 MSLRRSILSRRFSRSFNNQNRNERNAVESGRLGGELWAESDGWGSMLPELLGEIIKRVEESEDRWPQRQSVVACACVCKKWRDVTKDIVKSLPNSSSSTN NASPGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFMDKGKFLLAARRYRQGAHTEYIISLDADELSQGSNAYVGKLSSDFLGTNFTIFD SQPPHSGAKPSSSRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVLQETINDKILDNSKMNGLESASSGCTVLRNKAPRWHEHL QCWCLNFHGRVTVASVKNFQLVATMDQSQPGGRGDEDTVLLQFGKVGEDTFTMDYRLPLSAFQAFAICLTSFGTKLACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	0	1
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	4.58	0.8946
AT4G19350		EMB3006	embryo defective 3006 (.1)		Potri.004G235300 [exp]	5.65	0.8941
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	6.16	0.8984	ALDH22.1
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.013G029600 [exp]	6.32	0.8912
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	8.18	0.8992
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.005G245800 [exp]	10.00	0.8646	SMT1.2
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.004G133500 [exp]	10.39	0.8689	Pt-CDC2.1,1
AT3G12020			P-loop containing nucleoside t...		Potri.016G060400 [exp]	12.00	0.8435
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	12.40	0.8760	Pt-KUP10.1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.002G041500 [exp]	13.67	0.8568	Pt-BET11.2

Compare expression of checked genes

Potri.011G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.