Plant FIBer expression Database

Potri.011G109600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78810 103 / 5e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028833
[exp]
130 / 9e-33 AT1G78810 130 / 2e-33 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G109600.2 pacid=42782319 polypeptide=Potri.011G109600.2.p locus=Potri.011G109600 ID=Potri.011G109600.2.v4.1 annot-version=v4.1
ATGAATCCTTACGAGAGACCCTTGACCCCACATGAGCAGACACTGAGAGATGAGGTTATCTATCTTCACTCTCTCTGGCACCAAGGCCCTCCTGCCCTAA
ACCCTAACCCTTACGTTTACCCACCCAACCATGTAAATTATTCGTCAAGAAATCTCCATGTATCGAACCCTACATCCTTCAAAAAGACCAACAGACACAA
AACCACATACCAAAAGGCCAAGGACAGCAATGTCCCCCCACCAGGGCCAGTACCCGACCCACAACCCGACCCTGGTCCAGAATGGCCTGTCAACCCGCCA
CAGCCATCTTCTCCTCAATCGGGTTCTGGGTGGCCAGAATTCAAGTCCAACCTGAGCACCTCAGCCCGACCTGTTTCCGAGGTTGACCTGGGCAAGGTTG
CTGCAATGCACATGCAGCAAAAGGTTGTAAAGTGTTGCCATCAGTTTTTCGTTAAAAGGTTTGATTTAGATGGCAACGAAGATAACGGATTGGACGAGTT
TGATGGGGATGAACACTGTTATTATCATGATAATGATGTTGAAGAGAGTGAAGAATTTAAGTTCCTTTTGAGTTTGTTTGTGGAAAATCAAGAAATTAGA
GATTTTTATGAGAAGAACAATGAAAATGGGGATTTTTACTGCTTGATTTGTGGAGGGATAGGAGAGAAAGTAGGGAAAGTATATAGGGGTTGTACAGGCC
TTGTTCAGCATGCAAGAACGATTTCGAAAACAAAAAGGAAAGGGGCTCATAGGGCTTTTAGTCACCTTATTTGCAAGGTTCTTGGTTGGGATATTAGTAG
GCTTCCTATGATTGTGTTGAAAGGTGAACCTCTCAGTCGCACATTTGCAAATTCAGGCAGAACTGAGAATTTTTCAGATGAAGGTGATGGTAAAAAAGTA
CATGAAGATCTTAGTAATGATGTGCCAAACATTGAAGCATATAAAAATGGAGCCACGGAGTGCCTGGGATGTGAGCCACCACTGGTCTCTGATGTCCAAT
GGCTTTCCCAAAAGTATGTTGATGAATCTCCATCAACAACTGTAGGGTGGCCCACCTTGAAGACCTGTCGCTCTTCAGAAGCTTCTGCTGAAGAGCTAGA
GAGGTTTGCCATGGTGCAGTTGCAGCAGAAAGTTTTGGATGAATGCCAAAATTTCTTAGCAAACCCATCTGGTTCGATTTGTGATGAAGGTGAGGAAGAT
GGGGATCCAGATGATTGGATGGATGAAGATGGGTCTGATGAATGTGAAGAATTTAAGTTCTTTTTGAGATTGTTCACAGATAGTAATGAACTGAGGAATT
ATTATGAGAATCATTATGAAGGAGGGGAGTTTTGTTGTTTGGTTTGTTGTGCTTTAAAGAAGAAGGGTTGGAAGAAGTTCAAGGGGTGTCTTGGACTCCT
TCAGCATACAACTGCAATATCAAGGACAAAGAAGAAGAAGGCGCATAGGGCGTATGCACAGGTTATCTGTAAGGTTCTTGGTTGGGATGTTGATCAGCTT
CCGAGAATTGTATTAAAAGGAGAACCTTTAGGGCACTCTATGGCAAAGTCAGGCATCTTGCAGGGTGAACCAGAGATAAATGCTGGTTGTGGTGACGAGG
ACTCAAGTTTTCTTCAGACTGAAACTGTTCATGGTAATGTTAGTGTATCAGCTTCAAGAGAGTATTCTGGTATTTGTCAGAAAAACTGTGTGCAGAACAC
ATCAAATGAAGGAATTGTTAATGAACATGGCAATGATCTGGAAAAGGAAAGCATCAAAGCTGATAAATTGAGTTTGGTGGGTTCTAAGGCAAGCTTGAAG
GAAAGGGGTGGGAACTATAAAAAGCAAAACATAGCTTTCTGGGTAAACAATCGTTGTTGGCCTGAAACCAAACAGTCTCAATCAATGAGGAAAGCGAATC
CATTAGAAGAGGGATGTGAAGGTGAAGATCGCTGA
AA sequence
>Potri.011G109600.2 pacid=42782319 polypeptide=Potri.011G109600.2.p locus=Potri.011G109600 ID=Potri.011G109600.2.v4.1 annot-version=v4.1
MNPYERPLTPHEQTLRDEVIYLHSLWHQGPPALNPNPYVYPPNHVNYSSRNLHVSNPTSFKKTNRHKTTYQKAKDSNVPPPGPVPDPQPDPGPEWPVNPP
QPSSPQSGSGWPEFKSNLSTSARPVSEVDLGKVAAMHMQQKVVKCCHQFFVKRFDLDGNEDNGLDEFDGDEHCYYHDNDVEESEEFKFLLSLFVENQEIR
DFYEKNNENGDFYCLICGGIGEKVGKVYRGCTGLVQHARTISKTKRKGAHRAFSHLICKVLGWDISRLPMIVLKGEPLSRTFANSGRTENFSDEGDGKKV
HEDLSNDVPNIEAYKNGATECLGCEPPLVSDVQWLSQKYVDESPSTTVGWPTLKTCRSSEASAEELERFAMVQLQQKVLDECQNFLANPSGSICDEGEED
GDPDDWMDEDGSDECEEFKFFLRLFTDSNELRNYYENHYEGGEFCCLVCCALKKKGWKKFKGCLGLLQHTTAISRTKKKKAHRAYAQVICKVLGWDVDQL
PRIVLKGEPLGHSMAKSGILQGEPEINAGCGDEDSSFLQTETVHGNVSVSASREYSGICQKNCVQNTSNEGIVNEHGNDLEKESIKADKLSLVGSKASLK
ERGGNYKKQNIAFWVNNRCWPETKQSQSMRKANPLEEGCEGEDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78810 unknown protein Potri.011G109600
[exp]
0 1
AT5G67570 EMB246, DG1, EM... EMBRYO DEFECTIVE 246, embryo d... Potri.007G004900
[exp]
2.00 0.8432
AT3G11440 MYB AtMYB65 myb domain protein 65 (.1) Potri.001G224500
[exp]
3.46 0.8027
AT5G56310 Pentatricopeptide repeat (PPR)... Potri.003G223900
[exp]
5.47 0.8283
AT5G65720 ATNIFS1, NIFS1 ... NITROGEN FIXATION S HOMOLOG 1,... Potri.008G005101
[exp]
7.07 0.7473
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.002G207200
[exp]
7.14 0.8280
AT3G14830 unknown protein Potri.011G106600
[exp]
8.94 0.7904
AT3G21740 APO4 ACCUMULATION OF PHOTOSYSTEM ON... Potri.017G037200
[exp]
10.72 0.8162
AT5G62270 unknown protein Potri.017G017901
[exp]
11.66 0.7794
AT1G23180 ARM repeat superfamily protein... Potri.010G110200
[exp]
12.64 0.8275
AT4G39680 SAP domain-containing protein ... Potri.005G080500
[exp]
18.89 0.7989

Potri.011G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.