Plant FIBer expression Database

Potri.011G109700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14920 709 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
AT5G05480 374 / 2e-121 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G185100
[exp]
391 / 6e-128 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Potri.008G072400
[exp]
383 / 7e-125 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017926
[exp]
752 / 0 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10025775
[exp]
621 / 0 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10025771
[exp]
504 / 1e-171 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10017437
[exp]
379 / 9e-123 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10035890
[exp]
280 / 6e-87 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10007518
[exp]
226 / 3e-69 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12222 PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence
>Potri.011G109700.1 pacid=42782194 polypeptide=Potri.011G109700.1.p locus=Potri.011G109700 ID=Potri.011G109700.1.v4.1 annot-version=v4.1
ATGTATAGTGTTGTTTCTCCAGAGAAAACAGCACTCCAAAAAGCGTTCTTTCTTTTTTCATCTCAAGGAAAAGAAAAGAAAAGAAAAAAGAGAGTTAACA
ACAACCAGTCAATGGCCGCTTCTCTCTTCCATCTCCCCTTCCTCTTCGTCTTTCTCCTCCACCCTCTTTCCTCCACAGCTAACATCCACAAAACCAACAA
CCTTCTCAAATCACATCTCTTTACAGAACCCACTTCCATAACCAAAACACACCCAGCCCATAAACCCCTCAATGACACCCCACCAACTGTTTTCTTTGAA
GTTACCAAACCCATAGATGTCCCCAATACTAAACCTTGCAAGCACTTTATTCTCCAACACGACTTTGCCTCTACTTATGGCAAACCTCCTGTTCTTGTAA
ACTATACCCCTCCCTCTCATTGCCCATCTCAAGATTTCTCCAAGATTGTCCTTGAATGGAAGGCAACTTGCAAAGGGAGGCAATTTGATCGTATTTTTGG
GGTTTGGTTAGGTGGTGTGGAGCTTCTTAGGAGTTGCACTGCGGAGCCTAGAGCAACTGGGATTGTTTGGACTGTTCGGAAGGATATAACAAGGTATTAT
TCATTGCTTGTTAAGAATGAGACTCAAGAATTTGCTGTTTATATGGGTAATATCGTTGATAGTACTTATACTGGTATATACCATGTGAATGTAAGTATTT
ACTTTTATCCTGCTGAAAAGAAATTGAGTCATAGTGATCATGGTTTTAATAATTTGGCATCTGGGAGGGATTCTAAGGCTGATTTGATCTTGCCCATTTC
GCGAAATTTTCCGTTGAATGATGGGTTTTGGTTTGAAATTCAGAATTCTACTGATTCTGAGGCGAAGGAATTCAAGATACCTCAAAATGTGTACAGGGCT
GTGTTGGAGGTTTATGTTTCTTTTCATGAGAATGATGAATTTTGGTATGGAAATTATCCTAATGAGTATATTATTGCAAATAATCTCACTGGTTTCCCGG
GAAATGGACCTTTTAGAGAGGTTGTGGTTAGTCTTGATGGAGAGATTGTTGGCGCAGTTTGGCCTTTTACTGTGGTTTTTACCGGTGGGATTAATCCTCT
CTTGTGGAGACCCATTACTGCCATTGGTTCATTTGATCTCCCCTCTTATGATATTGAAATCACGCCCTTCTTAGGAAATATATTGGATGGAAAGACTCAC
AAGTTAGGATTTAGTGTCACGAATGCTTTGAATGTGTGGTTTATAGATGCCAATTTGCATCTTTGGCTGGACCATAGGAGCACAATTACAGAAGGGAAGC
TTTTGAAACATGAAAGCAAGCCTCTTGCTTTATCTTTGGTATCAAATTTTACAGGTTTGAATGGAAAATTCTTGACAAGTGCACGCAGGTTCATCTCCTC
AAATGGATGGGTAAAGTCCTCTCATGGGAACATCACTACCCGTTTTAATCAACACTTTGGTTACCGCAACTTGATGGAGATGGGCAAGGATGGTGATTTG
CAGATCGTGAATCAGACGATTAAATTTACTGATAATGTTTCTTTCAGGAAGCCATCCTCTAATGTTAAAGCATTCAAGTCGTTAAAAAATTTCGAGTTTG
ACATGTACTCTGACTACATGGATCAAGGAAATGGCACTTCCTTGTCGGTGGCAAATGTTACGTTGGGATTCAATGAGAAAAATGTTAAACATGCTGGTTT
GGGATTTGCATCGAACATTCTCAGAAATCTGCAGAATGGGCAGGGTGTTATGGTTGTGAAGAATAACTTGGTTCAAAGTGGTATGGGGAGCACACAACAG
GAATACACATACAATGGTAGTGGCTTCTGCTATTTCAGGAACATAAGCAGCTCAAACTACACTATTCTAGATGACAATGTTGGAAATACATGCAGTGAAA
GGAATCATTCTCATCTAGGTTTTGGACTTGGCAGATGGTGGCAATTTCCAGCTCGAAGGGCTTCTCTAGCATCTGAATTACTGAATAAGTATCATGATGG
AGTTTGA
AA sequence
>Potri.011G109700.1 pacid=42782194 polypeptide=Potri.011G109700.1.p locus=Potri.011G109700 ID=Potri.011G109700.1.v4.1 annot-version=v4.1
MYSVVSPEKTALQKAFFLFSSQGKEKKRKKRVNNNQSMAASLFHLPFLFVFLLHPLSSTANIHKTNNLLKSHLFTEPTSITKTHPAHKPLNDTPPTVFFE
VTKPIDVPNTKPCKHFILQHDFASTYGKPPVLVNYTPPSHCPSQDFSKIVLEWKATCKGRQFDRIFGVWLGGVELLRSCTAEPRATGIVWTVRKDITRYY
SLLVKNETQEFAVYMGNIVDSTYTGIYHVNVSIYFYPAEKKLSHSDHGFNNLASGRDSKADLILPISRNFPLNDGFWFEIQNSTDSEAKEFKIPQNVYRA
VLEVYVSFHENDEFWYGNYPNEYIIANNLTGFPGNGPFREVVVSLDGEIVGAVWPFTVVFTGGINPLLWRPITAIGSFDLPSYDIEITPFLGNILDGKTH
KLGFSVTNALNVWFIDANLHLWLDHRSTITEGKLLKHESKPLALSLVSNFTGLNGKFLTSARRFISSNGWVKSSHGNITTRFNQHFGYRNLMEMGKDGDL
QIVNQTIKFTDNVSFRKPSSNVKAFKSLKNFEFDMYSDYMDQGNGTSLSVANVTLGFNEKNVKHAGLGFASNILRNLQNGQGVMVVKNNLVQSGMGSTQQ
EYTYNGSGFCYFRNISSSNYTILDDNVGNTCSERNHSHLGFGLGRWWQFPARRASLASELLNKYHDGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14920 Peptide-N4-(N-acetyl-beta-gluc... Potri.011G109700
[exp]
0 1
AT3G62660 GATL7 galacturonosyltransferase-like... Potri.014G125000
[exp]
5.09 0.8291
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.010G049800
[exp]
8.30 0.7350
AT1G17120 CAT8 cationic amino acid transporte... Potri.001G378500
[exp]
18.65 0.7966 Pt-CAT8.3
AT1G51630 O-fucosyltransferase family pr... Potri.010G250600
[exp]
25.09 0.7753
AT3G57070 Glutaredoxin family protein (.... Potri.006G041800
[exp]
44.00 0.7687
AT2G27920 SCPL51 serine carboxypeptidase-like 5... Potri.009G003100
[exp]
44.74 0.7632
AT1G17745 PGDH D-3-phosphoglycerate dehydroge... Potri.010G249600
[exp]
48.68 0.7848
AT1G22410 Class-II DAHP synthetase famil... Potri.005G162800
[exp]
62.45 0.7458 DHS4
Potri.002G226400
[exp]
73.44 0.7607
AT3G26370 O-fucosyltransferase family pr... Potri.008G185200
[exp]
75.63 0.7445

Potri.011G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.