Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14930 385 / 3e-134 HEME1 Uroporphyrinogen decarboxylase (.1.2.3) AT2G40490 237 / 3e-76 HEME2 Uroporphyrinogen decarboxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390800 [exp] 471 / 5e-168 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.019G048900 [exp] 240 / 2e-77 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.013G083200 [exp] 76 / 3e-16 AT2G40490 319 / 3e-109 Uroporphyrinogen decarboxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043079 [exp] 409 / 2e-142 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10011170 [exp] 405 / 5e-142 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10030544 [exp] 227 / 4e-72 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10012892 [exp] 227 / 4e-72 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [poplar] [flax] Methionine_synt PF01208 [poplar] [flax] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Potri.011G109800.2 pacid=42781042 polypeptide=Potri.011G109800.2.p locus=Potri.011G109800 ID=Potri.011G109800.2.v4.1 annot-version=v4.1 ATGAACTGCTCTTCTTCTTCTTATAATATTCTTACAAGTTGCTTAACATGGAGAACCTCTTCAATCGTGCCCTTACAGTTAGGGTTTCGCTCCACAAAAT CTAAGTCCTCTCCCCGAAGAGTCCACGTCGCCTTCTCATCTTCTTCTTCTTCTTCCTCCTCCGATCTACTCTTGGTAAAGGCTGCAAAAGGAGAACCTGT AAGTAGACCTCCAGCGTGGATGATGCGTCAAGCAGGAAGGTATATGGCTGTCTACAGAAAGCTTGCTGAGAAATATCCATCCTTCAGGGAGAGGTCAGAG ACGACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGGAAGCTTTTCATCCTGATGGTGTTATTATTTTCTCTGACATACTTACACCACTACCTGCAT TTGGTGTCCCATTCGACATAGAAGAAGTGAGGGGTCCTGTTATTCATTCTCCAATTCGTTCTGAAGAAGGCTTGAAGGCTTTGCATCCGATTGAATTAGA GAAACTTCAGTTTGTGGGAGACTCACTTAGGATATTGTGCCGTGAGGTTGAGGGGCATGCTGCAGTTCTGGGTTTTGTTGGAGCACCTTGGACAATAGCT ACATATATAGTGGAAGGGCGTACAACTCGTACATATACAACCATAAAGAGTATGTGCCATACAGCACCACAAGTGTTAAGGGCTCTCTTCTCACATCTGA CGAAGGCGATTTCTGACTACATTGTTTTTCAAGTGGAGTCAGGGGCTCATTGCATACAAATATTTGACTCGTGGGGTGGACAGCTACCTCCTGACATGTG GGATTGTTGGTCAAAAGCCATATATTGA
AA sequence Show only first row Show all	>Potri.011G109800.2 pacid=42781042 polypeptide=Potri.011G109800.2.p locus=Potri.011G109800 ID=Potri.011G109800.2.v4.1 annot-version=v4.1 MNCSSSSYNILTSCLTWRTSSIVPLQLGFRSTKSKSSPRRVHVAFSSSSSSSSSDLLLVKAAKGEPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSE TTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEEVRGPVIHSPIRSEEGLKALHPIELEKLQFVGDSLRILCREVEGHAAVLGFVGAPWTIA TYIVEGRTTRTYTTIKSMCHTAPQVLRALFSHLTKAISDYIVFQVESGAHCIQIFDSWGGQLPPDMWDCWSKAIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Potri.011G109800 [exp]	0	1
AT4G29540		AtLpxA	bacterial transferase hexapept...		Potri.006G150200 [exp]	3.16	0.8275
AT5G64160			unknown protein		Potri.001G206032 [exp]	3.60	0.8643
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Potri.003G207100 [exp]	7.00	0.8345
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	9.48	0.8514
					Potri.001G265000 [exp]	10.58	0.8251
AT2G19080			metaxin-related (.1)		Potri.018G147625 [exp]	12.24	0.8251
AT5G10620			methyltransferases (.1)		Potri.006G278500 [exp]	12.96	0.8368
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Potri.001G359400 [exp]	13.26	0.8344
AT2G30620			winged-helix DNA-binding trans...		Potri.008G162300 [exp]	14.14	0.8189
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	15.32	0.7737

Compare expression of checked genes

Potri.011G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.