Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78860 397 / 6e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 397 / 9e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78830 370 / 2e-125 Curculin-like (mannose-binding) lectin family protein (.1) AT1G16905 365 / 1e-123 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 340 / 2e-113 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G12000 85 / 9e-18 S-locus related protein SLR1, putative (S1) (.1) AT5G35370 85 / 2e-17 S-locus lectin protein kinase family protein (.1) AT4G21390 82 / 1e-16 B120 S-locus lectin protein kinase family protein (.1) AT3G51710 81 / 2e-16 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT4G00340 79 / 1e-15 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110500 [exp] 683 / 0 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 662 / 0 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 563 / 0 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 555 / 0 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 505 / 2e-178 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 448 / 6e-156 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 404 / 2e-140 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 134 / 1e-33 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G102600 [exp] 108 / 3e-25 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000579 [exp] 447 / 9e-156 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10022495 [exp] 436 / 2e-151 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 96 / 7e-21 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 90 / 5e-19 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 88 / 3e-18 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10004283 [exp] 86 / 1e-17 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10014371 [exp] 84 / 4e-17 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 81 / 6e-16 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10018405 [exp] 78 / 4e-15 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10031805 [exp] 78 / 5e-15 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.011G110200.1 pacid=42782039 polypeptide=Potri.011G110200.1.p locus=Potri.011G110200 ID=Potri.011G110200.1.v4.1 annot-version=v4.1 ATGGAACTGCCATTGTTTTCTCTTTGTCTTCTCTTCTCAATATCCTTCACTGTCCATGCTACTGTTCCTCCTTCTTCAACATTTAAGTACGTCAATGAAG GAGAGTTTGGGGAATACATTTCGGAGTATGTTCCAGATTATCGTCCACTGCCCATAGGTACTTCCCCTTTCCAACTTATCTTTTATAACACCACCCCAAA TGCATACACTCTTGCTCTGCGTATGGGCACTGTGAGGTCAGAATCAACAATGCGTTGGGTTTGGGAAGCCAACCGAGGAAACCCAGTTCGCGAAAATGCC ACTCTCACCTTAGGGGGGGACGGAAATCTTGTCTTGGCAGATGCTGATGGCAGGGTCGCTTGGCAAACCAACACAGCCAATAAAGGTGTTGTTGGCTTAC AATTGCTGTCTAATGGCAACATGGTGCTTCATGATTCCAAGGGAAACTTTATCTGGCAAAGTTTCGACTCTCCTACAGATACCCTGTTGGTGGGCCAATC ACTTCGTGTTGGAGGTGTAACTAGGCTTGTGAGCCGAGCCTCTGAGACGCACAACTCCGATGGGGCCTATAGCCTGGTCATGGAACCTAAAAGACTGGCC ATGTACTATAAGAGTCCGAATTCCCCTAAACCATATATCTACTACGATTTCGATTCAGTGTACAACGGTCGTCTACAGAATGCGACTCTAAATTGCGCTC CAAACGGCTACGACGATCTTGCTAATGACCTGACTTTGGATCTCTCTACCGGGAACGCAATGACACTCGCCAGACCCAAATACAACAGCACGTTGTCGTT TCTTAGAATTGGGATAGATGGGAGCCTTAAGATGTACACTTACAACAATAAAGTGGACTATCAAGCATGGGAAGAGACCTACACTCTCTTTTCCAGAGAT GGTTTTCCGGAGGGAGAGTGCCAATTACCCGAGAGATGTGGTAAGTTTGGGCTTTGTGAAGACAGCCAATGTGTTGCTTGCCCATTGCCAAGTGGACTCA TGGGCTGGAGCAAGTACTGTGAGCCAGTGAAGCCTCCAGCCTGTGGTTCTAAGAATTTTTACTACTATAAACTAGAAGGTGTTGATCATTCCATGAGCAA GTATGGAAGTGGAAGCGGAGCAATGAAGGAAGACGACTGTGGAAAGAAATGTTCAAGTGATTGCAAGTGTTTGGGTTATTTTTACAACAAAGAAATATCC AAGTGTTGGATTGCTTATGATCTTCAAACCCTCACCAAGGTTGCAAACTCGACGCATGTGGGTTACATAAAGGCACCAAAGCAATAA
AA sequence Show only first row Show all	>Potri.011G110200.1 pacid=42782039 polypeptide=Potri.011G110200.1.p locus=Potri.011G110200 ID=Potri.011G110200.1.v4.1 annot-version=v4.1 MELPLFSLCLLFSISFTVHATVPPSSTFKYVNEGEFGEYISEYVPDYRPLPIGTSPFQLIFYNTTPNAYTLALRMGTVRSESTMRWVWEANRGNPVRENA TLTLGGDGNLVLADADGRVAWQTNTANKGVVGLQLLSNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVGGVTRLVSRASETHNSDGAYSLVMEPKRLA MYYKSPNSPKPYIYYDFDSVYNGRLQNATLNCAPNGYDDLANDLTLDLSTGNAMTLARPKYNSTLSFLRIGIDGSLKMYTYNNKVDYQAWEETYTLFSRD GFPEGECQLPERCGKFGLCEDSQCVACPLPSGLMGWSKYCEPVKPPACGSKNFYYYKLEGVDHSMSKYGSGSGAMKEDDCGKKCSSDCKCLGYFYNKEIS KCWIAYDLQTLTKVANSTHVGYIKAPKQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78860			D-mannose binding lectin prote...		Potri.011G110200 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.001G293300 [exp]	3.31	0.8371
					Potri.001G028900 [exp]	5.91	0.8507
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	6.16	0.8893
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	8.71	0.8861
					Potri.011G003325 [exp]	9.16	0.8348
AT2G18160	bZIP	GBF5, ATBZIP2	G-BOX BINDING FACTOR 5, basic ...		Potri.005G119300 [exp]	15.29	0.7960
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	17.49	0.8468
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G006800 [exp]	17.66	0.8605
AT3G03270			Adenine nucleotide alpha hydro...		Potri.017G144301 [exp]	19.44	0.8152
AT3G20340			unknown protein		Potri.011G139400 [exp]	23.06	0.8334

Compare expression of checked genes

Potri.011G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.