Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78860 403 / 3e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 399 / 1e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 376 / 4e-128 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 356 / 9e-120 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 346 / 9e-116 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT3G12000 104 / 3e-24 S-locus related protein SLR1, putative (S1) (.1) AT4G32300 99 / 5e-22 SD2-5 S-domain-2 5 (.1) AT5G35370 96 / 7e-21 S-locus lectin protein kinase family protein (.1) AT4G00340 96 / 8e-21 RLK4 receptor-like protein kinase 4 (.1) AT5G03700 95 / 8e-21 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G391300 [exp] 721 / 0 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 607 / 0 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 588 / 0 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 572 / 0 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 513 / 0 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 431 / 4e-149 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 389 / 5e-135 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 144 / 4e-37 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G102600 [exp] 115 / 1e-27 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022495 [exp] 446 / 3e-155 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000579 [exp] 444 / 2e-154 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 117 / 4e-28 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 110 / 1e-25 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10024343 [exp] 109 / 3e-25 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 106 / 2e-24 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 102 / 4e-23 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10004283 [exp] 97 / 2e-21 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10014371 [exp] 96 / 6e-21 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10023868 [exp] 92 / 1e-19 AT5G03700 458 / 3e-158 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.011G110300.1 pacid=42781054 polypeptide=Potri.011G110300.1.p locus=Potri.011G110300 ID=Potri.011G110300.1.v4.1 annot-version=v4.1 ATGGAACGGCCATGGTTCTTCTCTCTTTTATTGCTCTTCTCCATATACAACCTTGCCCAGTCCACTGTCCCTCCTTCTTCCAGATTTAAGGAAGTTAATA CTGGAGACTTTGCGGAAGCCCTTTCAGAGTATAGTTCAGATTTTCGCGGCCTGGACCTCTCTGTTTCCATTTTCCAACTTTGCTTTTATAACACCACCCC TAATGCATTCACTCTCGCTATACGTATGGGTACTAGGAGGTCACCTGCAATGAGGCGTTTTGTTTGGGAAGCCAACCGAGGCAACCCAGTTGGGGAAGAT GCCACTCTCACTTTTGGTGAGGATGGTAACCTTATCTTGGCCGATGCTGATGGCAGGGTTGCTTGGCAAACCAACACTGCCAACAGAGGTGTTGTAGGCT CGCAAATGCTAACAAATGGTAACATGGTGCTTCATGATTCTAAAGGCAATTTCATCTGGCAAAGTTTTGACTATCCTACAGATACTCTTTTGGTTGGTCA ACCTCTTCGTGTTGGAGGCGTCACCAGGCTTGTGAGTCGAGCATCTGACAAACAGAACACAAATGGAGCCTATAGCCTGGTCTTAGAACCCGAAAGATTA GCCATGTATTACAAGAGCCCAAACTCCCCCAAACCATATGTCTACTACACATTTAGTAAACAGAAAGGGCGTCTGCAATATGTGAGGCTAAGTAAAACCC CAAATTCGCAAGCCCTGAGTCTTGAGTTCTCTACAGGCGCTAGAACCTTGCTCTCTAGGCCCAAATTCAACAGCACAATGTCATTTCTTCGACTCGGGGT AGATGGGAATCTTAGAGTCTACACTTTCAATGACAAGTTAACTTCTGCTTCTTGGGAAGTGACTTTCACTCTTTTCTCTAGAGATGCACGTATTTGGGAA AGTGAGTGCCAATTGCCACAGAAATGTGGCAAGTTTGGGCTTTGTGAAGACAGTCGATGTGTTAGTTGCCCATTACCAACTGGGTTTAGGAAATGGACCA AGAAATGTGAACCAGTGAAGTCATCTGTGTGTAACAAGAATTTCTATTACTATAAACTAGAAGGGGTTGATCATTCGATGAGCAAGTACGGAGATGGAAG TGGACCGATGAAGAAGACTGATTGTGAGAAGAAATGCTCCGGTGACTGCAAGTGCTCAGGCTACTTTTACAACACAAAGACATCGATGTGTTGGATTGCT TATGACCTACAAACGCTGACCAAGGTTGCCAATCCTACACATGTGGGTTACGTAAAAGTACCGAACCACCAGTGA
AA sequence Show only first row Show all	>Potri.011G110300.1 pacid=42781054 polypeptide=Potri.011G110300.1.p locus=Potri.011G110300 ID=Potri.011G110300.1.v4.1 annot-version=v4.1 MERPWFFSLLLLFSIYNLAQSTVPPSSRFKEVNTGDFAEALSEYSSDFRGLDLSVSIFQLCFYNTTPNAFTLAIRMGTRRSPAMRRFVWEANRGNPVGED ATLTFGEDGNLILADADGRVAWQTNTANRGVVGSQMLTNGNMVLHDSKGNFIWQSFDYPTDTLLVGQPLRVGGVTRLVSRASDKQNTNGAYSLVLEPERL AMYYKSPNSPKPYVYYTFSKQKGRLQYVRLSKTPNSQALSLEFSTGARTLLSRPKFNSTMSFLRLGVDGNLRVYTFNDKLTSASWEVTFTLFSRDARIWE SECQLPQKCGKFGLCEDSRCVSCPLPTGFRKWTKKCEPVKSSVCNKNFYYYKLEGVDHSMSKYGDGSGPMKKTDCEKKCSGDCKCSGYFYNTKTSMCWIA YDLQTLTKVANPTHVGYVKVPNHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78860			D-mannose binding lectin prote...		Potri.011G110300 [exp]	0	1
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.006G149600 [exp]	5.74	0.9893	ACS6,ACS3.1
					Potri.002G022400 [exp]	8.12	0.9830
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Potri.006G179800 [exp]	12.96	0.9823	NAC140
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060200 [exp]	13.96	0.9710
					Potri.008G070501 [exp]	14.49	0.9823
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060300 [exp]	16.06	0.9673
					Potri.015G034150 [exp]	17.14	0.9823
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Potri.016G005600 [exp]	18.33	0.9823
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	19.97	0.9605
AT3G29970			B12D protein (.1)		Potri.017G098800 [exp]	22.97	0.9563

Compare expression of checked genes

Potri.011G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.