Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78850 404 / 7e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 401 / 2e-137 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 362 / 3e-122 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 357 / 5e-120 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 346 / 7e-116 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 91 / 2e-19 S-locus lectin protein kinase family protein (.1) AT3G12000 82 / 1e-16 S-locus related protein SLR1, putative (S1) (.1) AT4G32300 81 / 6e-16 SD2-5 S-domain-2 5 (.1) AT4G21390 76 / 2e-14 B120 S-locus lectin protein kinase family protein (.1) AT4G00340 75 / 3e-14 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110000 [exp] 766 / 0 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 682 / 0 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 546 / 0 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 545 / 0 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 491 / 5e-173 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G066200 [exp] 447 / 9e-156 AT1G78830 387 / 2e-131 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G391200 [exp] 385 / 3e-133 AT1G78860 296 / 2e-98 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.004G061900 [exp] 140 / 6e-36 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.016G102600 [exp] 109 / 2e-25 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022495 [exp] 437 / 1e-151 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000579 [exp] 433 / 3e-150 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 106 / 2e-24 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 100 / 4e-22 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 99 / 1e-21 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10002917 [exp] 91 / 4e-19 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10004283 [exp] 86 / 9e-18 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 83 / 1e-16 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10014371 [exp] 81 / 3e-16 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10031805 [exp] 80 / 1e-15 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G110500.1 pacid=42782007 polypeptide=Potri.011G110500.1.p locus=Potri.011G110500 ID=Potri.011G110500.1.v4.1 annot-version=v4.1 ATGTCAAAATTGTTTTCTCTGTGTCTGCTCCTATCAATATTCTTCATTGCCCACTCTACTGTTCCTCCTTCTTCAACATTTAAGTTCGTCAATGAAGGAG AGTTTGGGCCATACATTTCGGAGTATGTTCCAGATTATCGTCCACTGCCCATAGGCACTTCCCCATTCCAGCTTATGTTTTATAACACCACCCCTAATGC ATACACTCTAGCTCTACGTATGGGTACTAGGAGGTCAGAATCATTAACGCGCTGGGTTTGGGAAGCCAACCGAGGCAACCCAGTTCGCGAAAATGCCACT CTTACCTTTGGAAAGGATGGAAACCTTGTCTTAGCCGATGCTGATGGCAGGGTTGCTTGGCAAACCAACACTGCCAATAAAGGTGTTGCTGGGTTCGAAG TGCTACCCAATGGTAACATGGTGCTTCATGATTCTAAGGGTAACTTTATCTGGCAAAGCTTTGACTCTCCTACTGATACTCTCTTGGTGGGACAATCTCT TCGGGTTGGAGGTGCGACTAGACTTGTGAGTCGGGCCTCACAGAAGGAGAACTCTGATGGCGCCTATAGCCTGGTCATGGAATCCAAAAGATTGGTTATG TACTATAAGAGTCCGAATTCTCCTAAACAATATTTCTATTACACGTTCAATACACTCCAAGATCGTCTACAAAATGTGACTCTAAATTGTAACCCAGATA GTTATGACAATTCGGCCAGTGAGGTGACTTTGGATTTATCTTCTGGGGGTTGGAGCGTTCACGCCAGACCTAAATTCAATGCTACGCTGTCATTTCTTAG AATTGGGATAGATGGGAACCTTAGGATCTACTCTTACAACAATAAGGTGGACTACATGGCATGGGATGTGAGCTTCAATCTCTTCTCCAGGGATGGTTTT CCAGAGAGTGAGTGCCAGTTACCAGAGAGATGTGGTAAGTTTGGGTTGTGTGAAGACAGCCAATGTGTTGCTTGCCCATCACCAAGTGGTCTTCTAGGCT GGAGCAAGAATTGCGAACCTGTAAAGCCACCCGCCTGTGGTTCTAAAGATTTTTACTACTATAAATTAGAAGGCGTTGATCATTCCATGAGCAAGTATGC AAGTGGGAGCGTAGCAGTGAAGGAGGATGACTGTGGAAAAAAATGTTCAAGTGACTGTAAGTGTATGGGTTACTTCTACAACAAGGAGACATCCAAGTGT ACGATTGCTTATGATCTCCAAACCCTAACCAAGGTTTCAAATTCTACACATGTAGGTTACATAAAGGCACCAAAACGTTAA
AA sequence Show only first row Show all	>Potri.011G110500.1 pacid=42782007 polypeptide=Potri.011G110500.1.p locus=Potri.011G110500 ID=Potri.011G110500.1.v4.1 annot-version=v4.1 MSKLFSLCLLLSIFFIAHSTVPPSSTFKFVNEGEFGPYISEYVPDYRPLPIGTSPFQLMFYNTTPNAYTLALRMGTRRSESLTRWVWEANRGNPVRENAT LTFGKDGNLVLADADGRVAWQTNTANKGVAGFEVLPNGNMVLHDSKGNFIWQSFDSPTDTLLVGQSLRVGGATRLVSRASQKENSDGAYSLVMESKRLVM YYKSPNSPKQYFYYTFNTLQDRLQNVTLNCNPDSYDNSASEVTLDLSSGGWSVHARPKFNATLSFLRIGIDGNLRIYSYNNKVDYMAWDVSFNLFSRDGF PESECQLPERCGKFGLCEDSQCVACPSPSGLLGWSKNCEPVKPPACGSKDFYYYKLEGVDHSMSKYASGSVAVKEDDCGKKCSSDCKCMGYFYNKETSKC TIAYDLQTLTKVSNSTHVGYIKAPKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78850			D-mannose binding lectin prote...		Potri.011G110500 [exp]	0	1
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.011G021216 [exp]	5.47	0.9652
					Potri.001G021300 [exp]	9.74	0.9515
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	12.84	0.9593
AT4G37060		AtPLAIVB, PLP5,...	phospholipase A IVB, PATATIN-l...		Potri.019G014401 [exp]	14.28	0.9639
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050701 [exp]	14.96	0.9632
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.002G019000 [exp]	15.77	0.8920
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.015G041300 [exp]	18.11	0.9403
AT3G16660			Pollen Ole e 1 allergen and ex...		Potri.010G012400 [exp]	18.33	0.9617
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029400 [exp]	20.73	0.8998
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.015G132800 [exp]	22.97	0.9380	Pt-CYP96.4,CYP96A16v2

Compare expression of checked genes

Potri.011G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.