Plant FIBer expression Database

Potri.011G110800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16900 764 / 0 Alg9-like mannosyltransferase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G392050
[exp]
91 / 6e-22 AT1G16900 81 / 3e-19 Alg9-like mannosyltransferase family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028153
[exp]
759 / 0 AT1G16900 726 / 0.0 Alg9-like mannosyltransferase family (.1)
Lus10042853
[exp]
392 / 2e-131 AT1G16900 355 / 3e-117 Alg9-like mannosyltransferase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Potri.011G110800.1 pacid=42782397 polypeptide=Potri.011G110800.1.p locus=Potri.011G110800 ID=Potri.011G110800.1.v4.1 annot-version=v4.1
ATGGCGCTAGCATTACCAACTCGGCAAAGACGAGGAGCAGCGTCTGATCTCCCATCGCCGTCCTCCTCGCCATCAAAACCTTACGAAAAGGAAGACAAAC
GAAAGCGATCAGAGGAAGGGCAAGAACATAAAGCAATAGGATGGTTCTTACCCTTACTCGCTTTAGGAATGTTGCGCTACTTGAGTGCTACATCAAATAT
CATTCATGATTGTGATGAGGTTTTCAATTATTGGGAGCCTCTTCATTTTCTGCTCTATAAATCTGGTTTCCAAACCTGGGAATACAGTTCTCAGTTTGCG
CTGAGGTCGTATTTATACATTAATTTCCATGAATTAGTCGGATTACCAGCTTCCTGGTTGTTTCCTGATGACAAAGTGAGAGTGTTCTATGCAGTAAGGT
TTTTTCTAGGTTTCGTGTCAGTTATTGCTGATGCTACGCTAGTAGTAGCACTTTCAAGGAAGTATGGTAAACGACTTGCTTCCTATGCGCTCGCCATGTT
ATGTTTAACCAGTGGTTGTTTCTTTGCTAGCACGAGTTTCTTGCCGAGTTCGTTTTCTATGTATGCCATGAGTCTTTCGTCGGGATTATTTTTACTTGGG
AAACCTGCTTTTGCTGTTGCCGTTGCAGCAGTTGGAGTAATTCTTGGCTGGCCGTTCTCAATTTTGGCTTTCATGCCGATTACAATTTACTCTTTGGCAA
GAAGATTTAAACAAACATTTTTAGCTGGGGCAGTCACTTCGCTTGTTCTTCTTGTGCTCTCGGTGCTTGTTGACTATTACTACTACAAACGGTGGACATC
ATCTGTTTTTAATCTCATAGTATATAATGTCCTAGGAGGTGGTGAGAGCCACTTATATGGGATTGAAAGCCCTTTATTTTATCTGAGGAATGGATTTAAC
AATTTCAACTTCTGTTTCATCCTGGGTTTACTCTTCCTTGCATTTCTACCCATTGCAAGGAGAAAGTATGCTCCAGACCTGCTAATTGTGGTTTCACCTC
TTTATATATGGCTGGTGCTCATGTCTTTGCAACCACACAAAGAAGAAAGGTTCCTTTATCCAATATACCCTCTTGTCTGTGTTGCTGCTTCAGCTGTCAT
TGAGAGCTTTCCTGATCTTTTCCGAGACAAATATAATCCCCATGACAATTCCTGGCCAGTTGTGATAGCTAAATTTGTCAGGCCTTTGGTTCTCGGCCTA
ATATTATCTGCATCCCATGCTCGTACATTTTCGTTGATTAATGGTTATGGTGCTCCTTTGGAGGCTTACAAGATTTTGGAGCACTATGATGATGTAGAAA
CAGGTTCTACTCTTTGTGTCGGAAGTGAATGGCATCGCTTTCCTTCATCATTTTTTGTTCCTGAATACATCAGTGAAGTTCGGTGGATTGATGATGGATT
CCGAGGTCTTCTTCCATTACCATTCAATTCTACCCTCGGTGGGACTGCAGCAGCACCTCCTTATTTTAACAATAAGAACAAGGCATCAGATGAGCAATTT
ATCAGAGATATTGAAGCTTGTACTTTCCTAGTTGAGCTGCAGCTTAATCGACCTTACCCTACTCGTGGAAGTGACTTGTCAACATGGGAGCCAATTGCAG
CATTGCCCTATCTAGACAGGGAGTTCTCACCTTCCATGTACCGGTCCTTTTTCATCCCGTATCTGTGGCAAGAGAAGAATGTTTTTGGAATGTACAAGTT
GTTCAAAAGAGTATCAAAATGA
AA sequence
>Potri.011G110800.1 pacid=42782397 polypeptide=Potri.011G110800.1.p locus=Potri.011G110800 ID=Potri.011G110800.1.v4.1 annot-version=v4.1
MALALPTRQRRGAASDLPSPSSSPSKPYEKEDKRKRSEEGQEHKAIGWFLPLLALGMLRYLSATSNIIHDCDEVFNYWEPLHFLLYKSGFQTWEYSSQFA
LRSYLYINFHELVGLPASWLFPDDKVRVFYAVRFFLGFVSVIADATLVVALSRKYGKRLASYALAMLCLTSGCFFASTSFLPSSFSMYAMSLSSGLFLLG
KPAFAVAVAAVGVILGWPFSILAFMPITIYSLARRFKQTFLAGAVTSLVLLVLSVLVDYYYYKRWTSSVFNLIVYNVLGGGESHLYGIESPLFYLRNGFN
NFNFCFILGLLFLAFLPIARRKYAPDLLIVVSPLYIWLVLMSLQPHKEERFLYPIYPLVCVAASAVIESFPDLFRDKYNPHDNSWPVVIAKFVRPLVLGL
ILSASHARTFSLINGYGAPLEAYKILEHYDDVETGSTLCVGSEWHRFPSSFFVPEYISEVRWIDDGFRGLLPLPFNSTLGGTAAAPPYFNNKNKASDEQF
IRDIEACTFLVELQLNRPYPTRGSDLSTWEPIAALPYLDREFSPSMYRSFFIPYLWQEKNVFGMYKLFKRVSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16900 Alg9-like mannosyltransferase ... Potri.011G110800
[exp]
0 1
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.005G226100
[exp]
1.41 0.8066
AT3G57880 Calcium-dependent lipid-bindin... Potri.004G043000
[exp]
7.74 0.7602
AT3G63250 HMT-2, ATHMT-2 ... HOMOCYSTEINE METHYLTRANSFERASE... Potri.005G213100
[exp]
9.79 0.7012 HMT5,SMTA.2
AT4G01320 ATSTE24 Peptidase family M48 family pr... Potri.014G088900
[exp]
14.49 0.6962 ATSTE24.1
AT3G23990 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat... Potri.003G173900
[exp]
19.23 0.7216
AT1G76310 CYCB2;4 CYCLIN B2;4 (.1) Potri.005G251400
[exp]
20.19 0.7414 Pt-CYCB2.2
AT4G30996 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE ... Potri.006G187800
[exp]
20.85 0.7017
AT4G10040 CYTC-2 cytochrome c-2 (.1) Potri.013G101601
[exp]
23.23 0.7119
AT5G14850 Alg9-like mannosyltransferase ... Potri.018G098700
[exp]
24.65 0.6651
AT5G26330 Cupredoxin superfamily protein... Potri.002G156100
[exp]
29.06 0.6370

Potri.011G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.