Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GF14.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42590 424 / 3e-152 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G26480 414 / 5e-148 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 399 / 4e-142 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 384 / 3e-136 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT5G38480 362 / 1e-127 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G78300 362 / 1e-127 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 355 / 8e-125 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT3G02520 355 / 8e-125 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT4G09000 354 / 3e-124 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G65430 339 / 9e-119 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G392200 [exp] 498 / 0 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 419 / 6e-150 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 418 / 1e-149 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.008G095000 [exp] 416 / 5e-149 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 411 / 8e-147 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.004G101700 [exp] 365 / 2e-128 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 362 / 3e-127 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 356 / 3e-125 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 356 / 3e-125 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029835 [exp] 434 / 2e-155 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 425 / 2e-152 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 421 / 2e-150 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 424 / 3e-149 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 409 / 6e-146 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 409 / 8e-146 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10004652 [exp] 403 / 1e-143 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10026660 [exp] 400 / 2e-142 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10013908 [exp] 404 / 2e-141 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 377 / 1e-133 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [poplar] [flax] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Potri.011G110900.1 pacid=42782378 polypeptide=Potri.011G110900.1.p locus=Potri.011G110900 ID=Potri.011G110900.1.v4.1 annot-version=v4.1 ATGGATTCATCAAAGGATCGCGAGAACTTCGTCTACGTCGCTAAGCTCGCCGAGCAAGCTGAACGCTACGACGAAATGGTGGATGCCATGAAGAAAGTGG CGAAACTTGATGTTGAATTAACAGTGGAGGAGAGAAACTTACTCTCTGTGGGATACAAGAATGTGATTGGTGCGAGGAGGGCATCATGGAGAATCTTGTC ATCAATTGAGCAGAAGGAGGAGTCAAAAGGGAATGAAACAAATGTGAAGAGGATCAAAGAGTATAGGAAGAAGGTGGAGGCAGAGTTAACTGGCGTTTGC AATGATATCATGACTGTGATTGATGAGCATCTCATTCCATCATCTATACCTGGGGAATCCTCTGTGTTCTACCATAAGATGAAAGGTGATTATTACCGGT ATCTAGCAGAGTTCAAGAGTGGTAATGAGAGGAAAGAGGCAGCTGATCAGTCACTTAAGGCATATGAGACTGCTACATCAACTGCAGCAAGAGATCTATC TCCCACCCATCCCATTCGACTGGGTTTGGCTCTTAATTTCTCTGTGTTCTACTATGAGATTATGAACTCACCAGAACGGGCCTGCCATCTTGCGAAGCAA TCATTTGATGAAGCTATTTCAGAGCTGGATACCCTGAGTGAAGAGTCTTACAAGGATAGCACTTTGATTATGCAACTGTTGAGGGACAACCTCACTCTGT GGACTTCTGATATTCCTGAGGATGGAGAAGACCAGAAGATGGAAACCTCTGCAAGAGCTGGTGGGGGTGAAGATGCTGAGTGA
AA sequence Show only first row Show all	>Potri.011G110900.1 pacid=42782378 polypeptide=Potri.011G110900.1.p locus=Potri.011G110900 ID=Potri.011G110900.1.v4.1 annot-version=v4.1 MDSSKDRENFVYVAKLAEQAERYDEMVDAMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEESKGNETNVKRIKEYRKKVEAELTGVC NDIMTVIDEHLIPSSIPGESSVFYHKMKGDYYRYLAEFKSGNERKEAADQSLKAYETATSTAARDLSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ SFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMETSARAGGGEDAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.011G110900 [exp]	0	1	Pt-GF14.3
AT2G46170			Reticulon family protein (.1.2...		Potri.002G165400 [exp]	6.24	0.8889
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Potri.001G222200 [exp]	8.66	0.9009	Pt-ACCAL.3
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G103800 [exp]	9.16	0.8662	VF14.1
AT1G01170			Protein of unknown function (D...		Potri.016G055200 [exp]	11.61	0.8704
AT2G18990		TXND9	thioredoxin domain-containing ...		Potri.009G092700 [exp]	15.81	0.8902
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G392200 [exp]	18.02	0.8713	Pt-GF14.4
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G162400 [exp]	18.33	0.8714	CHI.2
AT1G64520		RPN12A	regulatory particle non-ATPase...		Potri.001G088200 [exp]	21.49	0.8797
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.013G057500 [exp]	22.47	0.8851
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Potri.002G077400 [exp]	26.11	0.8550

Compare expression of checked genes

Potri.011G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.