Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53300 707 / 0 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT2G42580 625 / 0 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 606 / 0 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G14950 556 / 0 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G65160 314 / 4e-98 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 292 / 8e-90 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 247 / 2e-73 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 81 / 2e-15 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT4G30480 77 / 4e-15 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G04190 72 / 3e-13 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G392601 [exp] 538 / 0 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.005G166300 [exp] 410 / 2e-133 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 324 / 5e-102 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 323 / 1e-101 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 309 / 4e-96 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.012G045000 [exp] 79 / 8e-16 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.015G036000 [exp] 79 / 3e-15 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.010G082900 [exp] 76 / 1e-14 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G178900 [exp] 74 / 2e-14 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028154 [exp] 779 / 0 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 769 / 0 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10022500 [exp] 291 / 3e-89 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 275 / 1e-83 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 78 / 1e-15 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 77 / 2e-14 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10041189 [exp] 72 / 2e-13 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 68 / 6e-12 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022603 [exp] 68 / 2e-11 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 66 / 7e-11 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.011G111500.2 pacid=42780300 polypeptide=Potri.011G111500.2.p locus=Potri.011G111500 ID=Potri.011G111500.2.v4.1 annot-version=v4.1 ATGATGTCGCATTCACCGAAACCCTCCATTGGAGGAGGAAACTTAGACCTCAATTCACTAACTGATCAACTCCGTGACTCACTGTCTTCATTCGAAGCCA ACAAGCCTGATTTCCGTGAACTCGATCTGGGTTCACCAGTTTCACCTCTCCGAACTCGTGGTGGACTCATCACTACAACCACCGCCACCGCCACCGCCGC CACCACCACCACCACCACCACCTCCTCCAGCTCCAGTTCCTCCGGATCCGCATCCGGTGCTCAAAACCCACTTCACAAACCCAACAATAGCAACCACTCA GGCGAGTTATCAAACTCGAGTGAGAGCAGCCCCACTGCTGGTGCCAAAAAGGGTCAACCGGGTCATTCTAGATCCGACTCTTTAACTTATTCGGGTCAAA TTACCAGCCAGAGTGCTGTAAACTCTCCTGCAACAGGCAATGTGTTACCTACCGGTAACATTTGTCCGTCGGGCAGGATCTTGAAGACAGGCATGGGAAT GGCGAATCGGAGTGCCAAAGCGGATGTTTTAGGATCCGGGACCGCAAATTATGGTCACGGGAGCATAATGCGGGGCGGAGGGAGCGCAAAATGTGCTAAC TTGGATGTTGTTAATTCGGCAAGTAGGAATGCTTGGAGTGTGCGTGCAGGGAGTGTGGATCCGGAGGAGGTGAAGAGGACTGGAAATGAGATGTATAAAA AAGGGTGTTTTGGGGAGGCGTTAGGATTGTATGACAAGGCTATTGCTTTGGCACCTGGGAATGCTGCTTATAGGAGTAACAGGGCGGCAGCGTTGATGGG ATTAGGGAGAGTTGTGGAGGCGGTGAAAGAGTGCGAGGAGGCTGTTAGGTTGGATCCTAATTATTGGAGAGCACATCAGAGGTTGGGGGTTTTGTTAATT AGGTTAGGACTGGTTGAGAGTGCCCGGAAGCACCTATGCTTCCCTGGACAGCATCCAGATCCTGTCGAATTGCAGAAGTTGCAATTAGTAGAGAAACATC TTAGCAAATGTTCTGATGCACGGAAGGTTAATGATTGGAATGGTACGTTAAGGGAAGCAGAAGCTTCAATTGCTGCTGGAGCAGACTATTGCCCCCAGCT CTTTATGTGTAGAGCTGAAGCACTTTTGAAGCTCCACCAATTAGAAGATGCTGAATCATGCTTATTGAAAGTTCCAAAATTAGAACCACATGCCACCTGC TCGCAGGCTAGATTTTTTGGGATGCTTTCTGAAGCTTACCCGTTCTTGGTCCAAGCACAGATCGAGATGGCTCTAGGAAGGTTTGAGAATGCAGTTGCAG CTGCTGAGAAAGCTGGACAGATTGATTCACGAAATGTTGAAGTAGCAGTGCTGCTTAAAAATGTGCGACTAGTAGCTAGAGCTCGTACCCGCGGCAATGA TCTCTTCAAATCGGAAAGGTTCACTGAAGCCTGTTCAGCATATGGGGAAGGCCTTAGGCTTGATCCTTCAAACTCTGTTCTCTATTGCAACAGGGCAGCA TGTTGGTTTAAGCTTGGATCATGGGAGAGATCCATTGATGACTGCAATCAAGCTTTACGAATCCAACCTAACTACACAAAAGCCCTTCTTAGAAGAGCTG CCTCAAACAGCAAGTTAGAAAGGTGGGCTGATGCCGTGAGAGATTATGAAGTTTTGAGAAGGGAACTTCCAGATGACAATGGAGTAGCTGAATCTCTATT TCATGCTCAAGTTGCATTGAAGAAATCTCGTGGAGAAGAAGTGTATAATATGAAGTTTGGCGGTGAAGTAGAGGAAGTGTTGGGGTTTGAACAGTTCAGA GCTGCAATATCATTGCCTGGTGTTTCAGTGGTTCATTTCAAATCATCCTCTAATGTGCACTGCAAGCAGATATCTCCATTTGTGGATACATTATGTGGTC GGTATCCATCCATAAACTTTCTCAAGGTGGACGTGGAGGAACATCCAGCAATTGCAAATGCCGAGGATGTGAGGATTGTTCCAACATTCAAGATATACAA AAATGGCAACCGAGTGAAGGAGATTGTCTGCCCAAGTCATGATGTGCTGGAACATTCGGTGAGGCATTACAGCTTTTAG
AA sequence Show only first row Show all	>Potri.011G111500.2 pacid=42780300 polypeptide=Potri.011G111500.2.p locus=Potri.011G111500 ID=Potri.011G111500.2.v4.1 annot-version=v4.1 MMSHSPKPSIGGGNLDLNSLTDQLRDSLSSFEANKPDFRELDLGSPVSPLRTRGGLITTTTATATAATTTTTTTSSSSSSSGSASGAQNPLHKPNNSNHS GELSNSSESSPTAGAKKGQPGHSRSDSLTYSGQITSQSAVNSPATGNVLPTGNICPSGRILKTGMGMANRSAKADVLGSGTANYGHGSIMRGGGSAKCAN LDVVNSASRNAWSVRAGSVDPEEVKRTGNEMYKKGCFGEALGLYDKAIALAPGNAAYRSNRAAALMGLGRVVEAVKECEEAVRLDPNYWRAHQRLGVLLI RLGLVESARKHLCFPGQHPDPVELQKLQLVEKHLSKCSDARKVNDWNGTLREAEASIAAGADYCPQLFMCRAEALLKLHQLEDAESCLLKVPKLEPHATC SQARFFGMLSEAYPFLVQAQIEMALGRFENAVAAAEKAGQIDSRNVEVAVLLKNVRLVARARTRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAA CWFKLGSWERSIDDCNQALRIQPNYTKALLRRAASNSKLERWADAVRDYEVLRRELPDDNGVAESLFHAQVALKKSRGEEVYNMKFGGEVEEVLGFEQFR AAISLPGVSVVHFKSSSNVHCKQISPFVDTLCGRYPSINFLKVDVEEHPAIANAEDVRIVPTFKIYKNGNRVKEIVCPSHDVLEHSVRHYSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	1.41	0.9197
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	3.16	0.8752
AT5G07720			Galactosyl transferase GMA12/M...		Potri.012G068300 [exp]	6.00	0.8812
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	6.63	0.8737
AT5G58520			Protein kinase superfamily pro...		Potri.001G280700 [exp]	10.19	0.8771
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	10.81	0.8764
AT3G07210			unknown protein		Potri.002G245700 [exp]	15.00	0.8489
AT5G05620		TUBG2 ,ATGCP2	GAMMA-TUBULIN 2, ARABIDOPSIS T...		Potri.002G167800 [exp]	16.61	0.8787
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	17.32	0.8554
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.010G129400 [exp]	19.89	0.8542

Compare expression of checked genes

Potri.011G111500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.