Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) AT3G14960 460 / 2e-163 Galactosyltransferase family protein (.1) AT2G26100 399 / 5e-139 Galactosyltransferase family protein (.1) AT1G77810 166 / 4e-48 Galactosyltransferase family protein (.1.2) AT1G05170 162 / 2e-46 Galactosyltransferase family protein (.1.2) AT1G33430 161 / 5e-46 Galactosyltransferase family protein (.1.2) AT1G32930 161 / 5e-46 Galactosyltransferase family protein (.1) AT1G22015 160 / 2e-45 DD46 Galactosyltransferase family protein (.1) AT1G11730 157 / 1e-44 Galactosyltransferase family protein (.1) AT2G32430 153 / 7e-43 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G392700 [exp] 550 / 0 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.006G228900 [exp] 405 / 2e-141 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.018G053150 [exp] 250 / 5e-81 AT2G26100 315 / 2e-106 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 170 / 3e-49 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 166 / 5e-48 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 162 / 2e-46 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 161 / 4e-46 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 160 / 7e-46 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 160 / 1e-45 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013683 [exp] 450 / 2e-159 AT1G53290 497 / 4e-178 Galactosyltransferase family protein (.1) Lus10014451 [exp] 328 / 8e-111 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10023955 [exp] 326 / 2e-110 AT2G26100 441 / 3e-155 Galactosyltransferase family protein (.1) Lus10017943 [exp] 301 / 1e-101 AT1G53290 328 / 2e-112 Galactosyltransferase family protein (.1) Lus10033248 [exp] 174 / 1e-50 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 171 / 1e-49 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 167 / 2e-48 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 165 / 2e-47 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 165 / 3e-47 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 162 / 1e-46 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.011G111700.1 pacid=42780512 polypeptide=Potri.011G111700.1.p locus=Potri.011G111700 ID=Potri.011G111700.1.v4.1 annot-version=v4.1 ATGCCTTCTTCTCCTAAATTCTTTCACTCCCGCATATCACAACCCTTTAATTCTCGCAGATCAACGCCTCTGATTCTCACTTTCCTTTTCATCGGAATCT CCGGCTTCATCTTCGGCTTCACTTCCTTTCTTACCTCCTCCCACAACTACCGTTGCTCCAATAACTCCCCGTCGCGATCGGTCCGTGTCGTCTGGGAAAC CAGCAACAATAGAAATGATAATGGCGGTGGGAACGCTGTCGTTTTGGATGGCGAGGACAGGAAGGAGAGGCATAAGGTTATGGGGTTTGTTGGGATTCAA ACTGGGTTCGAGTCATCGGGTCGGAGGCGGTCTTTGAGGAACACTTGGATGCCGTCCGATCGACAGGGACTTCAACGGTTGGAAGAATCTACTGGTTTGG CTTTCAGGTTTATTATTGGTAGAACCAATGATAAATCAAAGATGGCAGAGCTCAGAAAGGAGATTGCAGAATATGATGATTTCTTGCTAGTAGATATAGA GGAACAGTATAGTAAGCTCCCATATAAAACGTTAGCATTCTTTAAAGCTGCCTATGCACTTTTCGACTCCGAGTTTTATGTCAAAGCTGATGATGACATT TATCTGAGGCCAGATCGTCTTTCGACTCTTTTGGCAAAAGAGCGTACGCATTCTCAAACTTACCTTGGATGCATGAAAAAGGGACCAGTTTTCACTGATC CAAAGCTCAAATGGTATGAACCATTATCCTATTTGCTTGGTAAGGAGTACTTTTATCATGCGTATGGTCCAATATATGCTCTCTCTGCAGATGTTGTTGC AAGTTTAGTTGTACTCAGAAACAACAGCTTTCGGATGTTCAGCAATGAGGATGTTACAATTGGTGCATGGATGCTGGCAATGAATGTCAATCACGAGGAT AACAGAGCGTTATGCTCACCAGAGTGTACACCATCATCAATTGCAGTATGGGACATTCCCAAGTGTTCAGGTCTCTGTAATCCAGAAGCCAGAATATTAG AACTCCATCAACAGGAGAGCTGCTCAAAGAGTCCAACTATGGAACCAGATGATTAG
AA sequence Show only first row Show all	>Potri.011G111700.1 pacid=42780512 polypeptide=Potri.011G111700.1.p locus=Potri.011G111700 ID=Potri.011G111700.1.v4.1 annot-version=v4.1 MPSSPKFFHSRISQPFNSRRSTPLILTFLFIGISGFIFGFTSFLTSSHNYRCSNNSPSRSVRVVWETSNNRNDNGGGNAVVLDGEDRKERHKVMGFVGIQ TGFESSGRRRSLRNTWMPSDRQGLQRLEESTGLAFRFIIGRTNDKSKMAELRKEIAEYDDFLLVDIEEQYSKLPYKTLAFFKAAYALFDSEFYVKADDDI YLRPDRLSTLLAKERTHSQTYLGCMKKGPVFTDPKLKWYEPLSYLLGKEYFYHAYGPIYALSADVVASLVVLRNNSFRMFSNEDVTIGAWMLAMNVNHED NRALCSPECTPSSIAVWDIPKCSGLCNPEARILELHQQESCSKSPTMEPDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53290			Galactosyltransferase family p...		Potri.011G111700 [exp]	0	1
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	1.00	0.9724
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	1.73	0.9723
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.003G146200 [exp]	2.00	0.9723
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	2.82	0.9667
AT1G09430		ACLA-3	ATP-citrate lyase A-3 (.1)		Potri.013G004400 [exp]	3.31	0.9604	ACLA.3
AT5G53340			Galactosyltransferase family p...		Potri.015G023700 [exp]	3.60	0.9602
AT1G64650			Major facilitator superfamily ...		Potri.003G145600 [exp]	3.74	0.9626
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	3.87	0.9664
AT1G50120			unknown protein		Potri.007G071000 [exp]	5.83	0.9567
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	6.00	0.9658

Compare expression of checked genes

Potri.011G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.