Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53280 580 / 0 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 504 / 1e-178 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT4G34020 362 / 1e-121 AtDJ1C DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) AT3G02720 53 / 2e-07 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100900 [exp] 388 / 9e-132 AT4G34020 551 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Potri.004G076000 [exp] 56 / 3e-08 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 55 / 5e-08 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143880 [exp] 52 / 7e-07 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 48 / 8e-06 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143940 [exp] 44 / 0.0002 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020345 [exp] 618 / 0 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10009525 [exp] 615 / 0 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10019849 [exp] 352 / 1e-117 AT4G34020 537 / 0.0 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10014067 [exp] 306 / 5e-100 AT4G34020 454 / 1e-157 DJ-1 homolog C, Class I glutamine amidotransferase-like superfamily protein (.1.2) Lus10010964 [exp] 58 / 6e-09 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10031360 [exp] 56 / 3e-08 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF01965 [poplar] [flax] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Potri.011G111900.2 pacid=42780904 polypeptide=Potri.011G111900.2.p locus=Potri.011G111900 ID=Potri.011G111900.2.v4.1 annot-version=v4.1 ATGTCAATATTATTACGCCACGTAATCCCTCCTCCTCACTCTGTTCTCTACTCCACTTCAGAAAAATCGAAACTCAACTTCCCTTCTTTCCGTAATCCTC GTTTCTCTTTCTCATCGATCAAAGCCACTGCAGCAACTCCGATGGCTTCCACCACCAAGAAGGTTTTGGTGCCGATTGCCAATGGAACGGAGCCGATTGA GGCCGTCATAACTATCGACGTCTTAAGGAGAGGAGGTGCCGACGTGACGGTCGCTTCCATTGAGAAACAGATTCGTGTTGACGCGACTTACGATGTTAAA CTCGTTGCTGATTCTCTTCTTTCTGAGTGCAGCGACGCCGTTTTCGACCTCATTACTCTCCCTGGAGGGATACCTGGTGCCACAAATTTTAAAAATTGTC AACTTTTAGAAAAATTAGTGAAGAAACAAGTAGAGGATGGGAAACTTTACGCGGCGGTCTGTGCTTCTCCTGCAGTTGCGTTTGGTTCTTGGGGTTTGCT AAATGGATTGAAAGCGACTTGTCATCCGTTTTTTATGGATGAATTGAAATCAAGTGGTGCAATAACTGTTGAATCGAGAGTGCACGAAGAGGGGAATGTG GTGACAAGTCGTGGACCAGGAACTACTATGGAGTTTGCTGTTGCTTTAGTTGAGAAATTGTTTGGGAAAGAGAAAGCTGATGAGGTTTCGGGGCCTTTGG TGATGCGTTCCAACCATGGGGATGAATATAGCATAAAAGAACTAAATCCAATGCAGTGGACCTTTGACAATGTTCCTCAGGTTCTTGTACCCATTGCTAA TGGCACAGAGGAAATGGAAGCTATTATAATCATTGACATTCTGCGACGAGCTAAAGTAAATGTAGTGGTGGCCTCAGTTGAGGACAGCTTGGAAATTTTG GCCTCTCGTAAAGTTAAACTAGAGGCAGATATGCTCCTTGATGAGGCTGCTAAACTTTCATATGACCTAATTGTCTTGCCAGGTGGGCTTGGTGGTGCCC AAGCATTTGCGAAGTCCGAAAAGCTGGTGAATATGCTAAAGAAGCAGAGGGAATCAAATAGACCATATGGAGCTATGTGTGCATCTCCAGCTTTAGTCTT GGAGCCTCATGGCTTACTCAAGGGTAAAAAGGCCACAGCTTTTCCTGCAATGTGTAACAAGCTGTCGGATCCAAGTGAGATCGAAAATAGGGTTGTGGTT GATGGCAACCTCATCACCAGCAGAGGTCCTGGCACCACAATGGAGTTTGCCCTGGGAATCGTGGAGAAGCTGTTTGGGCGTGATAAAGCGCTGGAGCTCG CAAAGCCAATGCTTTTCACACATCCATAG
AA sequence Show only first row Show all	>Potri.011G111900.2 pacid=42780904 polypeptide=Potri.011G111900.2.p locus=Potri.011G111900 ID=Potri.011G111900.2.v4.1 annot-version=v4.1 MSILLRHVIPPPHSVLYSTSEKSKLNFPSFRNPRFSFSSIKATAATPMASTTKKVLVPIANGTEPIEAVITIDVLRRGGADVTVASIEKQIRVDATYDVK LVADSLLSECSDAVFDLITLPGGIPGATNFKNCQLLEKLVKKQVEDGKLYAAVCASPAVAFGSWGLLNGLKATCHPFFMDELKSSGAITVESRVHEEGNV VTSRGPGTTMEFAVALVEKLFGKEKADEVSGPLVMRSNHGDEYSIKELNPMQWTFDNVPQVLVPIANGTEEMEAIIIIDILRRAKVNVVVASVEDSLEIL ASRKVKLEADMLLDEAAKLSYDLIVLPGGLGGAQAFAKSEKLVNMLKKQRESNRPYGAMCASPALVLEPHGLLKGKKATAFPAMCNKLSDPSEIENRVVV DGNLITSRGPGTTMEFALGIVEKLFGRDKALELAKPMLFTHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Potri.011G111900 [exp]	0	1
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.005G175400 [exp]	7.54	0.8784
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.008G059100 [exp]	9.74	0.8555
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.019G133200 [exp]	15.81	0.8377
AT2G35010		ATO1	thioredoxin O1 (.1.2)		Potri.001G159000 [exp]	16.88	0.8426
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	22.44	0.8387
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.007G005300 [exp]	29.49	0.8464
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.008G164900 [exp]	59.89	0.8282
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084700 [exp]	65.26	0.8248
AT5G24650			Mitochondrial import inner mem...		Potri.015G000600 [exp]	70.19	0.8359
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120600 [exp]	79.32	0.7910

Compare expression of checked genes

Potri.011G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.