Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 475 / 7e-168 Protein kinase superfamily protein (.1) AT3G09010 344 / 3e-116 Protein kinase superfamily protein (.1) AT3G14840 347 / 2e-110 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 337 / 9e-107 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 335 / 5e-106 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 330 / 1e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 331 / 3e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 325 / 4e-102 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 324 / 5e-102 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 321 / 7e-101 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G393200 [exp] 617 / 0 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.011G142100 [exp] 489 / 3e-173 AT1G16670 530 / 0.0 Protein kinase superfamily protein (.1) Potri.001G438400 [exp] 479 / 3e-169 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 373 / 4e-128 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 362 / 2e-123 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 353 / 3e-120 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 350 / 4e-119 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 349 / 1e-118 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.004G063600 [exp] 331 / 3e-110 AT1G07650 479 / 4e-160 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026207 [exp] 490 / 2e-173 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 481 / 2e-170 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 439 / 2e-153 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 421 / 3e-146 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 347 / 7e-118 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 346 / 2e-117 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10004825 [exp] 341 / 4e-115 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10011193 [exp] 336 / 2e-113 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10018481 [exp] 335 / 6e-112 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1) Lus10023510 [exp] 332 / 1e-110 AT1G16670 331 / 1e-110 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G112000.3 pacid=42781743 polypeptide=Potri.011G112000.3.p locus=Potri.011G112000 ID=Potri.011G112000.3.v4.1 annot-version=v4.1 ATGAGTTGTTTTTCTTTTTTTTGCAAAAGGAAGGGAGTTTCCAGAGCTACACAAACCACAGAAGTTGATGATGAGGTTTCATGGGCACAGAACACTTGCT CTTACACTTACAGGGAATTGCGAATGGCCACTGACAATTTTAATCCAGCCAATAAAGTTGGAGAGGGAGGTTTTGGCTCTGTTTACAAGGGAATGCTCAA AGATGGCACCATGGCTGCCGTAAAGGTACTGTCAGCTGAATCAAGGCAAGGTTTAAAGGAGTTCTTGACAGAAATAAAAGTGATTGCAGATATAAAGCAC AACAACCTGGTTAAATTGTATGGTTATTGTGCAGAGGGAAACCATAGGATTTTGGTCTATGGCTATCTTAAGAATAACAGCCTTGCACAAACACTTCTTG GTGGAGGCCATAGCAATATCCAATTCAATTGGCCTACAAGGCGCAAAATATGCATTGGAGTTGCACGAGGGCTTGCATTCCTTCACGAGGAAGTCCAGCC ACATATTGTTCATAGGGATATTAAAGCAAGTAATGTTCTCCTTGATGATGAACTCGAACCCAAGATTTCAGACTTTGGTCTTGCAAAACTTTTCCCAGCC AACCTGACTCATATTAGCACAAACGTTGCTGGAACTGCAGGATATCTGGCGCCAGAATATGCAATTCGAGGTCAGTTGACAAGGAAAGCTGATATTTACA GTTTTGGTGTTCTATTGTTGGAAATCGTTTGTGGGAGGTCCAACACAAATAGGCGATTTCCTCTAGAAGAGCAATATCTGGTTGAAAGGGTATGGGATTT TTATCAGAATCTGGAGCTGGTTAATTTGGTGGACACATCGTTGGCTGGGGATTATGATGTCGAAGAGGCTTGCAATTACCTGAAGATAGGTCTTCTTTGC ATCCAAGACGTGCCAAAGCAGCGTCCATCCATGTCTACTGTTGTCATGATGTTAATGGGTGAGATAGAAGTGAATGACAAGATATCAAGGCCTGGCTTGC TGTCTGAATTCACGAGTTTTAAAGGTGACAAAATGCCGAAACACGAAGGTGGAAAAGACCAGAATAACAAGTGGGAAATGAAGAATTCATCCTCGACTTC AGTCAAGGTCGAAAATTCATCTTCATCATCAGGAGTGGACACTTCACACGCTACCATGACCTTCAGTTCTATATATGACCGGGGAAATTAA
AA sequence Show only first row Show all	>Potri.011G112000.3 pacid=42781743 polypeptide=Potri.011G112000.3.p locus=Potri.011G112000 ID=Potri.011G112000.3.v4.1 annot-version=v4.1 MSCFSFFCKRKGVSRATQTTEVDDEVSWAQNTCSYTYRELRMATDNFNPANKVGEGGFGSVYKGMLKDGTMAAVKVLSAESRQGLKEFLTEIKVIADIKH NNLVKLYGYCAEGNHRILVYGYLKNNSLAQTLLGGGHSNIQFNWPTRRKICIGVARGLAFLHEEVQPHIVHRDIKASNVLLDDELEPKISDFGLAKLFPA NLTHISTNVAGTAGYLAPEYAIRGQLTRKADIYSFGVLLLEIVCGRSNTNRRFPLEEQYLVERVWDFYQNLELVNLVDTSLAGDYDVEEACNYLKIGLLC IQDVPKQRPSMSTVVMMLMGEIEVNDKISRPGLLSEFTSFKGDKMPKHEGGKDQNNKWEMKNSSSTSVKVENSSSSSGVDTSHATMTFSSIYDRGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	2.64	0.8665
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	4.12	0.8769
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	10.53	0.8728
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	13.78	0.8700
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.012G002600 [exp]	16.18	0.7737
AT5G38260			Protein kinase superfamily pro...		Potri.017G007900 [exp]	22.44	0.8353
AT3G55640			Mitochondrial substrate carrie...		Potri.010G197400 [exp]	24.73	0.7823
					Potri.017G027900 [exp]	24.81	0.8600
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	24.81	0.8580
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	25.49	0.8426

Compare expression of checked genes

Potri.011G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.