Plant FIBer expression Database

Potri.011G112350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G112350.1 pacid=42781813 polypeptide=Potri.011G112350.1.p locus=Potri.011G112350 ID=Potri.011G112350.1.v4.1 annot-version=v4.1
ATGCCGATCAATGGATCTTTAATTATTTTGCTTAAAGTTGTCATGCTCTTGCTTGAGTTTCAACCAATGTATTGCTGCCAAATGTTTTCCAAGAAAGCAC
TGATCAGGAGAATTTGGAATCAAATATGCTACGTTTCTGACATTTCTTGGGCTCTTTTATTCTTACTGTTCTTTCTGGAATTTGGTCTTCTCGGTTGGTT
TTACCTTTTCTATATTTTCCTTCCATGCGAGTTGACTCTTCCCGTCAAAATAGTTGCTAAGGGCTTCAAGATTGCCAAAAAAAAATTGGTTTTGAAGACA
AAATTGACTGAGTATCTATGCTATTATCATGCATCGACAGGTTTGAAGTTAAGTTTTGAGATCGAGGATATATACAAGGTGCGGAGAAATATCCTCCGAT
ATATAGTAATTAAGACGCTTTGGTCTTCTCATTGA
AA sequence
>Potri.011G112350.1 pacid=42781813 polypeptide=Potri.011G112350.1.p locus=Potri.011G112350 ID=Potri.011G112350.1.v4.1 annot-version=v4.1
MPINGSLIILLKVVMLLLEFQPMYCCQMFSKKALIRRIWNQICYVSDISWALLFLLFFLEFGLLGWFYLFYIFLPCELTLPVKIVAKGFKIAKKKLVLKT
KLTEYLCYYHASTGLKLSFEIEDIYKVRRNILRYIVIKTLWSSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G112350
[exp]
0 1
AT3G12910 NAC NAC (No Apical Meristem) domai... Potri.005G098000
[exp]
2.64 0.9967 NAC077
Potri.006G261022
[exp]
9.27 0.9967
AT4G15550 IAGLU indole-3-acetate beta-D-glucos... Potri.006G055600
[exp]
12.48 0.9966 Pt-ZOG1.15
AT2G39210 Major facilitator superfamily ... Potri.006G122400
[exp]
15.09 0.9965
AT5G06740 Concanavalin A-like lectin pro... Potri.016G045000
[exp]
20.78 0.9962
AT3G19660 unknown protein Potri.001G290200
[exp]
22.58 0.9894
AT2G23620 ATMES1 ARABIDOPSIS THALIANA METHYL ES... Potri.007G037000
[exp]
23.66 0.9961
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.004G148900
[exp]
24.18 0.9959
Potri.003G010466
[exp]
25.29 0.9959
AT5G36160 Tyrosine transaminase family p... Potri.017G014200
[exp]
26.38 0.9914

Potri.011G112350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.