Plant FIBer expression Database

Potri.011G112500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31660 566 / 0 unknown protein
AT4G02465 81 / 6e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G394000
[exp]
816 / 0 AT1G31660 530 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032891
[exp]
585 / 0 AT1G31660 548 / 0.0 unknown protein
Lus10027134
[exp]
440 / 3e-153 AT1G31660 414 / 8e-143 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05291 Bystin Bystin
Representative CDS sequence
>Potri.011G112500.1 pacid=42782370 polypeptide=Potri.011G112500.1.p locus=Potri.011G112500 ID=Potri.011G112500.1.v4.1 annot-version=v4.1
ATGGCGAAGAAAAGAGAGAGGCACCAAAACCCAGAGCCTTTCCTCAAGGAGGATACAGACTCTATTGCTTCCACAAAGACACGAACCAAAGCATCAAAAC
ACCACCAGAAACAACAAAAAATGATATCGTCGGGGATGAGCTCGAAAATCTTGAAAGCGGCGTTGATTCAACAGAAGGAGATTCAAGCTGAGGAAGCGGG
AGAGAGGAACCCTAATTTTAATGCTTTGGAGGAAGAATTACCTGAGCGTGAGGAAGAGCAATATGCTGAGGATGAAATTGACGATTTTAGTGGTTTTTCA
GAGACTCAAAGCCAGTTTAATGATTATCCTGAGGAGATTGATGAGAACGATGAGAAATTGCTGGAGGCATTCTTGTCGAAGGATGCTGGTCCACAACAAA
CACTTACCGACCTTATCATTGACAAAATAAAAAAGAGGGATGCTCATGTTTCTTCAGAGACACAGCCTATGCCTAAGCTGGACCAGTCTCTCATAGATTT
GTACAAGGGAGTTGGCGAGTATCTTAGTAAATACACAGCTGGAAAGATACCTAAAGCTTTTAAACACATCCCTTCTATGCAACTTTGGGAGGATGTCTTG
TACCTGACCGAACCTCAGAAATGGTCACCAGCTGCAATGTATCAAGCCACAAGAATCTTCTCTTCGAATTTGGGTGCTAAGAAGGCCGAGCGCTTCTATA
GGCTTGTCTTACTTCCTAGAGTGAGAGATGATATTAGGATGAATAAGAGGTTGCATTTCAGTCTGTATCAAGCTTTAAAAAAGTCTCTATATAAACCTGC
TGCATTCAACAAGGGAATATTGCTTCCATTGTGTAAGTCAGGGACCTGCAATCTTAGGGAAGCTGTTATTGTTGGAAGTATTATTCAGAAGGTCTCCATT
CCTGTGCTTCATTCATGTGTTACACTGTTGAAACTTGCAGAAATGGATTATTGCGGCACAACAAGTTATTTTATCAAGCTTCTATTGGACAAGAAATATG
CCTTGCCATATCGTGTAGTTGATGCAGTTGTGGGTCATTTTATGAGATTTCTCGAGGATACAAGAATAATGCCTGTAATTTGGCATCAATCACTTCTTTC
ATTTGTGCAAAGGTACAAGAATGAACTGCAGAAGGAAGATAAAGATAACCTTAGAAGACTAGTTCTAAGGCAAAAGCATAAACTAGTATCTCCAGAAATA
ATCAGAGAGCTAGACAATAGCCGCAATCGCGGAGAGAAGGATGATCCCATGTCATTAATATCTCCCGTTTCGGTGATAAATAAAACAATTGAGGAAGACA
GGTTTGATATTCCAGAAGTACCTATGGAGGAGGACTGA
AA sequence
>Potri.011G112500.1 pacid=42782370 polypeptide=Potri.011G112500.1.p locus=Potri.011G112500 ID=Potri.011G112500.1.v4.1 annot-version=v4.1
MAKKRERHQNPEPFLKEDTDSIASTKTRTKASKHHQKQQKMISSGMSSKILKAALIQQKEIQAEEAGERNPNFNALEEELPEREEEQYAEDEIDDFSGFS
ETQSQFNDYPEEIDENDEKLLEAFLSKDAGPQQTLTDLIIDKIKKRDAHVSSETQPMPKLDQSLIDLYKGVGEYLSKYTAGKIPKAFKHIPSMQLWEDVL
YLTEPQKWSPAAMYQATRIFSSNLGAKKAERFYRLVLLPRVRDDIRMNKRLHFSLYQALKKSLYKPAAFNKGILLPLCKSGTCNLREAVIVGSIIQKVSI
PVLHSCVTLLKLAEMDYCGTTSYFIKLLLDKKYALPYRVVDAVVGHFMRFLEDTRIMPVIWHQSLLSFVQRYKNELQKEDKDNLRRLVLRQKHKLVSPEI
IRELDNSRNRGEKDDPMSLISPVSVINKTIEEDRFDIPEVPMEED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G31660 unknown protein Potri.011G112500
[exp]
0 1
AT2G18220 Noc2p family (.1) Potri.001G012800
[exp]
1.00 0.9363
AT5G16750 TOZ TORMOZEMBRYO DEFECTIVE, Transd... Potri.013G079600
[exp]
2.82 0.9131
AT4G28200 unknown protein Potri.007G040000
[exp]
4.24 0.8922
AT5G16930 AAA-type ATPase family protein... Potri.011G143300
[exp]
4.47 0.8843
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
4.89 0.9023
AT2G47990 SWA1, EDA13, ED... SLOW WALKER1, EMBRYO SAC DEVEL... Potri.014G135600
[exp]
5.91 0.8915
AT5G41190 unknown protein Potri.003G124700
[exp]
8.83 0.8748
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
9.16 0.8734
AT1G04945 HIT-type Zinc finger family pr... Potri.001G228000
[exp]
9.38 0.8894
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
9.38 0.8928

Potri.011G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.