Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14420 669 / 0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) AT3G14415 657 / 0 Aldolase-type TIM barrel family protein (.1.2.3) AT4G18360 635 / 0 Aldolase-type TIM barrel family protein (.1.2) AT3G14130 451 / 2e-159 Aldolase-type TIM barrel family protein (.1) AT3G14150 441 / 3e-155 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394400 [exp] 711 / 0 AT3G14420 668 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.004G065200 [exp] 667 / 0 AT3G14420 651 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Potri.003G069400 [exp] 436 / 2e-153 AT3G14130 529 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.003G069600 [exp] 436 / 3e-153 AT3G14130 502 / 2e-179 Aldolase-type TIM barrel family protein (.1) Potri.003G069300 [exp] 420 / 6e-147 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013725 [exp] 663 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10005590 [exp] 663 / 0 AT3G14420 675 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6) Lus10038507 [exp] 650 / 0 AT4G18360 665 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10023302 [exp] 646 / 0 AT4G18360 664 / 0.0 Aldolase-type TIM barrel family protein (.1.2) Lus10042495 [exp] 456 / 3e-162 AT4G18360 461 / 1e-164 Aldolase-type TIM barrel family protein (.1.2) Lus10013171 [exp] 435 / 7e-153 AT3G14130 521 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10008133 [exp] 428 / 3e-150 AT3G14130 518 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10038144 [exp] 422 / 9e-149 AT4G18360 435 / 4e-154 Aldolase-type TIM barrel family protein (.1.2) Lus10013173 [exp] 214 / 6e-69 AT3G14130 246 / 7e-82 Aldolase-type TIM barrel family protein (.1) Lus10013724 [exp] 171 / 5e-53 AT3G14420 170 / 2e-53 Aldolase-type TIM barrel family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01070 [poplar] [flax] FMN_dh FMN-dependent dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.011G112700.6 pacid=42781579 polypeptide=Potri.011G112700.6.p locus=Potri.011G112700 ID=Potri.011G112700.6.v4.1 annot-version=v4.1 ATGGAGATAACCAATGTCATGGAGTACGAGGCCATCGCCAAGCAAAAGTTACCAAAGATGGTCTTTGACTACTATGCTTCTGGGGCAGAGGACCAGTGGA CTCTAGCAGAAAACAGAAATGCATTCTCAAGAATTCTGTTTCGACCCCGTATTCTTATTGATGTGAGCAAAATAGACATGGCCACCACTGTTTTGGGCTT CAAAATATCAATGCCTATTATGATTGCTCCAACTGCCATGCAGAAAATGGCTCATCCTGAAGGGGAGTATGCTACAGCAAGAGCTGCATCAGCTGCTGGG ACAATCATGACATTATCCTCATGGGCTACTTCCAGTGTCGAAGAGGTCGCTTCCACTGGACCTGGCATCCGCTTTTTCCAGCTCTATGTATACAAGGACA GGAATGTTGTTGCTCAGCTTGTCAGAAGAGCTGAGAGGGCTGGTTTCAAGGCTATTGCTCTTACAGTTGATACCCCAAGGTTGGGCCGCAGGGAGTCTGA CATCAAGAACAGATTTTCTTTGCCACCATTTTTGACATTGAAGAACTTTGAAGGTTTGGACCTTGGCAAGATGGACAAGGCCGATGACTCTGGACTTGCT TCATATGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGATGTGGAGTGGCTTCAGACAATCACCAGACTGCCAATTCTGGTGAAGGGTGTGCTCA CTGCCGAGGATGCAAGGCTTTCAGTTCAAGCTGGAGCAGCAGGAATTATAGTGTCGAATCACGGCGCTCGCCAACTTGATTACGTGCCTTCCACTATTAT GGCGCTGGAAGAGGTTGTCAAGGCTGCACAAGGACGAGTTCCGGTGTTCTTGGACGGTGGTGTAAGGCGTGGAACCGATGTCTTCAAGGCGTTGGCACTT GGAGCCTCCGGCATCTTTATTGGTCGACCAGTGGTCTTTTCACTTGCTTCTGAAGGAGAAGCTGGTGTGAGAAAAGTGCTTCAAATGCTGCGTGAGGAGT TTGAACTTACTATGGCATTAAGTGGCTGCCGTTCCCTCAAGGAAATCACTCGTGACCACATTGTAGCCGATTGGGACCATCCTCGTGCTCGCCTAGCTCC AAAGTTATAG
AA sequence Show only first row Show all	>Potri.011G112700.6 pacid=42781579 polypeptide=Potri.011G112700.6.p locus=Potri.011G112700 ID=Potri.011G112700.6.v4.1 annot-version=v4.1 MEITNVMEYEAIAKQKLPKMVFDYYASGAEDQWTLAENRNAFSRILFRPRILIDVSKIDMATTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG TIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFSLPPFLTLKNFEGLDLGKMDKADDSGLA SYVAGQIDRTLSWKDVEWLQTITRLPILVKGVLTAEDARLSVQAGAAGIIVSNHGARQLDYVPSTIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALAL GASGIFIGRPVVFSLASEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVADWDHPRARLAPKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14420			Aldolase-type TIM barrel famil...		Potri.011G112700 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	2.00	0.9849
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.014G140500 [exp]	2.00	0.9854
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	4.89	0.9828
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	5.00	0.9830	Pt-HPR.1
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	5.65	0.9838
AT1G67700			unknown protein		Potri.010G053600 [exp]	6.32	0.9798
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G100400 [exp]	6.48	0.9807	CAT2
AT5G17670			alpha/beta-Hydrolases superfam...		Potri.013G070700 [exp]	6.92	0.9720
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	10.48	0.9786
AT1G49975			unknown protein		Potri.001G292000 [exp]	11.40	0.9776

Compare expression of checked genes

Potri.011G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.