Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP25.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14400 690 / 0 UBP25 ubiquitin-specific protease 25 (.1) AT1G17110 227 / 1e-63 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G57990 216 / 4e-60 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 209 / 2e-58 UBP17 ubiquitin-specific protease 17 (.1) AT2G24640 204 / 3e-58 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 205 / 2e-57 UBP18 ubiquitin-specific protease 18 (.1) AT4G24560 207 / 2e-56 UBP16 ubiquitin-specific protease 16 (.1) AT5G46740 154 / 2e-39 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 137 / 9e-34 UBP20 ubiquitin-specific protease 20 (.1) AT4G39910 123 / 2e-30 ATUBP3 ubiquitin-specific protease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394600 [exp] 1082 / 0 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.005G156900 [exp] 234 / 1e-65 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 233 / 3e-65 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.011G095200 [exp] 225 / 3e-63 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 221 / 2e-61 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.018G009500 [exp] 215 / 1e-60 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G107500 [exp] 217 / 3e-60 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 214 / 4e-59 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G270600 [exp] 207 / 2e-58 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005591 [exp] 754 / 0 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10013726 [exp] 751 / 0 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10009273 [exp] 233 / 1e-65 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10020116 [exp] 212 / 2e-59 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 209 / 1e-58 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10035825 [exp] 196 / 5e-53 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 196 / 9e-53 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10043127 [exp] 179 / 4e-48 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 182 / 6e-48 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 180 / 7e-48 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G112800.4 pacid=42780374 polypeptide=Potri.011G112800.4.p locus=Potri.011G112800 ID=Potri.011G112800.4.v4.1 annot-version=v4.1 ATGGGCGGGTTTCAGCTGCAAAAATTGCAAATGAGTTGGCAACCGAGTTTGCTTAGTCAAAAACGAAAAAATGGTCCTCCTTTAGGGTTAAAGAATCTCG GCAACTCTTGTTATCTCAATAGCGTCCTTCAGTGCCTCACTTACACTCCTCCTCTCGCTAATTTCTGCCTGCGCCTCCAGCACTCCTCTCTCTGTGATTC CGTTGCTAACGGAGATAGAAAGAGAGACTGTCCGTTTTGTATTCTCGAAAAACGGATAGTCCGTTCACTCAGTTTGGATCTCACGCTTGACGCGCCAGCT AAGATTCAAAGCTGTTTGAAGATTTTTGCTGAGCATTTTCGCTGTGGACGACAGGAAGATGCTCACGAATTTTTGCGGTATGTGATTGATGCGTGCCATA ATACGTGTTTGCGTTTGAAAAAACTCAGAAGGAAAGGGATTGAGAACGGTGGTGGTGGTGGTGTGAGTGTGGTTAAGGAGATATTTGGAGGTGCATTGCA AAGTCAAGTGAAGTGCTTGTGTTGTAATTATGAGTCGAATAAAGTTGATGAGATTATGGATATCAGTTTAGATGTTCTGAATAGTTATTCGGTAAGAGAT GCAATGCAAAAGTTTTTTCAGCCAGAGGTTTTGGATGGGAATAACAAATACAAATGCGAAAAATGTCAGAAACTAGTGGCAGCTAGGAAGCAAATGTCAA TACTTCAAGCGCCAAATGTTCTTGTTATCCAACTGAAGAGATTTGAGGGCATATTCGGAGCGAAGATTGATAAGGCCATTGCATTTGAAGAAGTTTTGGT TCTTTCAAGCTTCATGAGCAAAACAAGCCAGGACCCACAACCTGAGTATAATCTTTTTGGTACCATTGTGCACTCTGGATACTCCCCGGAATCTGGACAC TATTATGCATATATAAAGGATGCAATGGGTCGGTGGTATTGCTGCAATGATTCATACGTGACACTCTCTACCCTGCAGGAGGTCTTGTCAGAGAAGGTCT ATGTTCTCTTCTTTTCTCGTACTAACCAAAGGCCAGCATCCGCTGCCTCCTCTTTTGCTTCCTATGGAGTAAAATCATGCGAATCAAATGGATGTGTGGA ATTTAAAAGTTCAAAGGGTGCTGTTCCTCTGAAAGCATTGCCCACAAAACCACAAGTTGAACAATCTTCAAAAAAGGATATTTCAGCCATGTCTAGGATT GATAGAGTGCCTTCAAGCCCACCGGTAAAGTCTAGCATTTGTGGGAACTCTGGATCCAAAAGTACCCCTCTATCTGTTAATGGAAAGGTTGATCATCTGA AGGGTCAAAACAAGGGAATGAATGGGAATGTAAAAGAGACAGTTCATGTGGAGAAACATGACAAAGATGTGTCAACAGTAACAAGCAGTAACGGTTTTGA AAAGCATAAAAATGTTGATGCTGTAGAAGGTGAAAACTGTCATGCATTTGCAGCAGCAAGTGAAAATGGTCATTCTCAAAATGCTGCTTTTAATTCTGTA AAGCCCCTTGTCTGTGACAGTAATGGTACAACAAGTAAGGTGACAACAGGAAGAGTACATGATCACCTTGAATTGCAAAATGGCAGTATGAAGTGTTGTG CTGACATTTCAGGTTTGAAGAGAAAGCTAAAGGAGGACACCTCCATTTTGCTTGCACAGGATGCTCAATCTCTAGCCAAAATTGAAGAATTTAAAGAAGC CCTCAAGCAACAGGCATCTTTGATTTTGGGATCATGCGGTTTTTTTGATAAGGTTTATGATTTTATGCGTGCGAGAAAGAGGTTGTGTGTTCATGAAGCA GGAAACAAACCAAGTGGTACTGAATTAAAGAAGTTGTTGATTGCAGATGCCAAGAGAACCTTTATTTCCCAAATACCCGAGTCATTGAAAGAGGACCTTG TCAAACGCCTCCAGTCATTTAGTCAAGAGAAACGGCATTCGTCAGCAGTTTTGGGGAACTCAACTGTCTCTTGA
AA sequence Show only first row Show all	>Potri.011G112800.4 pacid=42780374 polypeptide=Potri.011G112800.4.p locus=Potri.011G112800 ID=Potri.011G112800.4.v4.1 annot-version=v4.1 MGGFQLQKLQMSWQPSLLSQKRKNGPPLGLKNLGNSCYLNSVLQCLTYTPPLANFCLRLQHSSLCDSVANGDRKRDCPFCILEKRIVRSLSLDLTLDAPA KIQSCLKIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGIENGGGGGVSVVKEIFGGALQSQVKCLCCNYESNKVDEIMDISLDVLNSYSVRD AMQKFFQPEVLDGNNKYKCEKCQKLVAARKQMSILQAPNVLVIQLKRFEGIFGAKIDKAIAFEEVLVLSSFMSKTSQDPQPEYNLFGTIVHSGYSPESGH YYAYIKDAMGRWYCCNDSYVTLSTLQEVLSEKVYVLFFSRTNQRPASAASSFASYGVKSCESNGCVEFKSSKGAVPLKALPTKPQVEQSSKKDISAMSRI DRVPSSPPVKSSICGNSGSKSTPLSVNGKVDHLKGQNKGMNGNVKETVHVEKHDKDVSTVTSSNGFEKHKNVDAVEGENCHAFAAASENGHSQNAAFNSV KPLVCDSNGTTSKVTTGRVHDHLELQNGSMKCCADISGLKRKLKEDTSILLAQDAQSLAKIEEFKEALKQQASLILGSCGFFDKVYDFMRARKRLCVHEA GNKPSGTELKKLLIADAKRTFISQIPESLKEDLVKRLQSFSQEKRHSSAVLGNSTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	0	1	UBP25.1
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.016G119600 [exp]	1.00	0.8622
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.010G070400 [exp]	12.72	0.7224
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	16.09	0.7592
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	19.33	0.7391	Pt-UBP5.3
AT5G03910		ABCB29, ATATH12	ARABIDOPSIS THALIANA ABC TRANS...		Potri.006G211700 [exp]	20.56	0.7558
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	23.87	0.7351
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092250 [exp]	30.03	0.7120
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	31.78	0.7670
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	36.82	0.7633
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	37.14	0.7439

Compare expression of checked genes

Potri.011G112800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.