Plant FIBer expression Database

Potri.011G113575 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00680 934 / 0 ATCG00680.1, PSBB photosystem II reaction center protein B (.1)
ATCG00280 66 / 3e-11 ATCG00280.1, PSBC photosystem II reaction center protein C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G074868
[exp]
941 / 0 ATCG00680 926 / 0.0 photosystem II reaction center protein B (.1)
Potri.017G140700
[exp]
593 / 0 ATCG00680 634 / 0.0 photosystem II reaction center protein B (.1)
Potri.002G178801
[exp]
66 / 5e-12 ATCG00670 191 / 6e-62 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1)
Potri.013G142760
[exp]
67 / 1e-11 ATCG00280 853 / 0.0 photosystem II reaction center protein C (.1)
Potri.011G074401
[exp]
44 / 0.0002 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006594
[exp]
499 / 7e-177 ATCG00680 544 / 0.0 photosystem II reaction center protein B (.1)
Lus10006593
[exp]
348 / 2e-119 ATCG00680 352 / 1e-121 photosystem II reaction center protein B (.1)
Lus10001686
[exp]
113 / 1e-30 ATCG00680 117 / 4e-33 photosystem II reaction center protein B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00421 PSII Photosystem II protein
Representative CDS sequence
>Potri.011G113575.1 pacid=42782164 polypeptide=Potri.011G113575.1.p locus=Potri.011G113575 ID=Potri.011G113575.1.v4.1 annot-version=v4.1
ATGGGTTTGCCTTGGTATCATGTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGCTGGCTGTCCATATAATGCATACAGCTTTGGTTGCTGGTTGGG
CCGGCTCGATGGCTCTATATGAATTAGCAGTTTTTGATCCTTCTGACCCCGTTCTCGATCCAATGTGGAGACAAGGTATGTTCGTTATACCCTTCATGAC
TCGTTTAGGAATAACCAATTCATGGGGTGGTTGGAGTATTACAGGAGGAACTATAACGAATCCGGGTATTTGGAGTTATGAAGGTGTGGCTGGGGCGCAT
ATTGTGTTTTCTGGCTTGTGCTTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATCTTTTGTGATGAACGTACAGGAAAACCTTCTTTAG
ATTTGCCCAAGATCTTTGGAATTCATTTATTTCTCTTAGGAGTGGCTTGTTTTGGGTTTGGTGCTTTTCATGTAACAGGATTGTATGGTCTTGGAATATG
GGTGTCTGATCCTTATGGGCTAACCGGAAAACTACAATCTGTAAATCCAGCGTGGGGTGTGGAAGGTTTTGATCCTTTTGTTCCGGGAGGAATAGCCTCT
CATCATATTGCAGCAGGGACATTGGGCATATTGGCGGGCCTATTCCATCTTAGTGTCCGCCCGCCCCAACGTCTATACAAAGGATTACGTATGAGAAATA
TTGAAACCGTGCTTTCCAGTAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCCATTGAATT
ATTTGGTCCCACTCGTTATCAATGGGATCAAGGATACTTCCAGCAAGAAATATATCGAAAAGTTGGTACTGGGCTGGCTGAAAATCAAAGCTTATCCGAA
GCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGAAATAATCCGGCAAAGGGTGGATTGTTCAGAGCAGGTTCAATGGATAACGGGG
ATGGAATAGCTATTGGGTGGTTAGGACATCCTCTATTTAGAGATAAAGAAGGGCGTGAGCTTTGTGTACGTCGTATGCCTACTTTTTTTGAAACATTTCC
GGTTGTTTTGGTAGACGGAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGGGCAGAATCGAAGTATAGTGTTGAACAAGTAGGTGTAACTGTTGAG
TTCTATGGTGGTGAACTAAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGCGCACAATTGGGTGAAATTTTTGAATTAGATC
GTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGTAGTCGAAGGGGTTGGTTTACTTTTGGACATGCTTCGTTTGCCCTGCTCTTCTTCTTCGGACACAT
TTGGCATGGCTCTCGAACCTTGTTCAGAGATGTTTTTGCTGGTATTGATCCAGATTTAGACGCTCAGGTGGAATTTGGAGCATTCCAAAAACTTGGAGAT
CCAACTACAAGAAGACAAGTAGTTTGA
AA sequence
>Potri.011G113575.1 pacid=42782164 polypeptide=Potri.011G113575.1.p locus=Potri.011G113575 ID=Potri.011G113575.1.v4.1 annot-version=v4.1
MGLPWYHVHTVVLNDPGRLLAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSYEGVAGAH
IVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLLGVACFGFGAFHVTGLYGLGIWVSDPYGLTGKLQSVNPAWGVEGFDPFVPGGIAS
HHIAAGTLGILAGLFHLSVRPPQRLYKGLRMRNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRKVGTGLAENQSLSE
AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAIGWLGHPLFRDKEGRELCVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVE
FYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSRRGWFTFGHASFALLFFFGHIWHGSRTLFRDVFAGIDPDLDAQVEFGAFQKLGD
PTTRRQVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G113575
[exp]
0 1
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.011G074868
[exp]
3.46 0.9944
ATCG00330 ATCG00330.1, RP... chloroplast ribosomal protein ... Potri.013G142336
[exp]
5.47 0.8915
ATCG00350 ATCG00350.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G141912
[exp]
9.53 0.9016
ATCG00340 ATCG00340.1, PS... Photosystem I, PsaA/PsaB prote... Potri.013G142124
[exp]
9.79 0.8988
ATCG00700 ATCG00700.1, PS... photosystem II reaction center... Potri.011G074784
[exp]
18.16 0.8516
AT4G33540 metallo-beta-lactamase family ... Potri.010G169900
[exp]
26.38 0.8660
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.019G028351
[exp]
28.56 0.8533
ATCG00690 PSBTC, ATCG0069... photosystem II reaction center... Potri.011G113800
[exp]
36.05 0.8475
AT2G29150 NAD(P)-binding Rossmann-fold s... Potri.005G039300
[exp]
59.51 0.8665
AT3G26040 HXXXD-type acyl-transferase fa... Potri.011G124500
[exp]
66.00 0.8682

Potri.011G113575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.