Plant FIBer expression Database

Potri.011G113784 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG00720 402 / 9e-145 ATCG00720.1, PETB photosynthetic electron transfer B (.1)
ATMG00220 122 / 7e-33 ATMG00220.1, COB apocytochrome b (.1)
AT2G07727 122 / 7e-33 Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G074750
[exp]
383 / 2e-137 ATCG00720 384 / 1e-137 photosynthetic electron transfer B (.1)
Potri.011G074700
[exp]
362 / 3e-129 ATCG00720 367 / 3e-131 photosynthetic electron transfer B (.1)
Potri.007G062202
[exp]
265 / 1e-91 ATCG00720 281 / 3e-98 photosynthetic electron transfer B (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0328 2heme_cytochrom PF00033 Cytochrome_B Cytochrome b/b6/petB
Representative CDS sequence
>Potri.011G113784.1 pacid=42781889 polypeptide=Potri.011G113784.1.p locus=Potri.011G113784 ID=Potri.011G113784.1.v4.1 annot-version=v4.1
ATGATATATGATTGGTTCGAAGAACGTCTTGAGATTCAGACGATTGCAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTT
TAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCCTTTGCTTCTGT
TCAATATATAATGACTGTAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT
CGTGTGTATCTCACGGGTGGCTTTAAAAAACCTCGTGAATTGACTTGGGTTACAGGTGTGGTTCTCGGTGTATTAACCGCATCCTTTGGCGTAACTGGTT
ATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTAAAAATTGTAACAGGCGTGCCGGAAGCTATTCCGGTAATAGGATCTCCTTTGGTAGAGTTATT
ACGTGGAAGTGCTAGTGTAGGACAATCCACTTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCAT
TTTCCAATGATACGTAAGCAAGGTATTTCGGGTCCTTTATAA
AA sequence
>Potri.011G113784.1 pacid=42781889 polypeptide=Potri.011G113784.1.p locus=Potri.011G113784 ID=Potri.011G113784.1.v4.1 annot-version=v4.1
MIYDWFEERLEIQTIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTVANFGWLIRSVHRWSASMMVLMMILHVF
RVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMH
FPMIRKQGISGPL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.011G113784
[exp]
0 1
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.011G074700
[exp]
1.41 0.9887
ATCG01060 ATCG01060.1, PS... iron-sulfur cluster binding;el... Potri.019G014344
[exp]
2.23 0.9514
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.007G062202
[exp]
3.00 0.9767
ATCG00280 ATCG00280.1, PS... photosystem II reaction center... Potri.013G142760
[exp]
5.47 0.9401
ATCG00270 ATCG00270.1, PS... photosystem II reaction center... Potri.013G142201
[exp]
7.74 0.9031
ATCG00630 ATCG00630.1, PS... PSAJ (.1) Potri.003G067501
[exp]
10.19 0.8991
ATCG00640 ATCG00640.1, RP... ribosomal protein L33 (.1) Potri.003G067400
[exp]
13.96 0.8777
ATCG00330 ATCG00330.1, RP... chloroplast ribosomal protein ... Potri.013G142336
[exp]
15.16 0.8566
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Potri.017G140700
[exp]
22.13 0.8323
ATCG01040 ATCG01040.1, YC... Cytochrome C assembly protein ... Potri.001G342966
[exp]
23.49 0.8550

Potri.011G113784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.