Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17180 265 / 2e-90 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78380 264 / 4e-90 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G17170 257 / 2e-87 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G53680 250 / 1e-84 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78340 249 / 4e-84 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78320 246 / 7e-83 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G78370 244 / 3e-82 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78360 240 / 8e-81 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17190 229 / 2e-76 ATGSTU26 glutathione S-transferase tau 26 (.1) AT3G43800 210 / 1e-68 ATGSTU27 glutathione S-transferase tau 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G113125 [exp] 415 / 6e-150 AT1G78380 259 / 2e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113000 [exp] 414 / 3e-149 AT1G78380 259 / 3e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113400 [exp] 351 / 5e-125 AT1G17170 231 / 6e-78 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Potri.011G140800 [exp] 284 / 6e-98 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437200 [exp] 280 / 2e-96 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 279 / 4e-96 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 278 / 7e-96 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 278 / 2e-95 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 276 / 6e-95 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019480 [exp] 283 / 1e-97 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10026198 [exp] 275 / 2e-94 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042468 [exp] 272 / 4e-93 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042470 [exp] 268 / 1e-91 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 274 / 9e-89 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10042469 [exp] 259 / 4e-88 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 254 / 4e-86 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10030362 [exp] 240 / 2e-80 AT1G17170 210 / 7e-69 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) Lus10030020 [exp] 211 / 6e-69 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10035304 [exp] 192 / 8e-62 AT1G17180 238 / 6e-80 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G114000.2 pacid=42780568 polypeptide=Potri.011G114000.2.p locus=Potri.011G114000 ID=Potri.011G114000.2.v4.1 annot-version=v4.1 ATGGCTAATGAAGTGGTTCTACTGGATTTTGAGATGAGTCCCTTTGCAGCAAGGGTGAGGATAGCTTTGGAAGAGAAGGGAATAGAATATAAATCTAAGG TAGAGGACTTGAGCAACAAGAGCTCTACTCTTCTCAAGATGAACCCAGTTCATCAGCAAATCCCTGTCTTAATCCATAATGGGAGACCCATCTGTGAGTC AATGATCATAGTTCAATATATTGATGAGGTTTGGAGCCATAAACCTTCATTGTTGCCTTCTGATCCTTATCGACGTGCACATGCCAGGTTTTGGGCTGAC TACATCGACAAGAAGATTTATCCTATTGGAAGGAATCTATGGGCATCTGAAGGTGAGGTCAAAGAATCATCGAAGAAGGACTTGTTTCAGTGCTTTAAAA TCTTGGAAGAAGAACTCGGAGACAAGCAATATTTTGGGGATGAGAGCTTTGGCTATATAGACTTGGCACTTATTCCGTTCTACAGCTTCTTTTACACCTT TGAGACCCTAGGAAACTGGAGCATGGTAGCCGAGTTCCCTAAGCTCGTGAAGTGGGGTGAGAGATGCTTGCAAAAGGAGAGCGTCTCCAAGTCTTTAAGT GACCAAAAGGAGATTTATGAAGCTGCTTTGCAGATCAAACAGGAACTGGGGATTGAATAA
AA sequence Show only first row Show all	>Potri.011G114000.2 pacid=42780568 polypeptide=Potri.011G114000.2.p locus=Potri.011G114000 ID=Potri.011G114000.2.v4.1 annot-version=v4.1 MANEVVLLDFEMSPFAARVRIALEEKGIEYKSKVEDLSNKSSTLLKMNPVHQQIPVLIHNGRPICESMIIVQYIDEVWSHKPSLLPSDPYRRAHARFWAD YIDKKIYPIGRNLWASEGEVKESSKKDLFQCFKILEEELGDKQYFGDESFGYIDLALIPFYSFFYTFETLGNWSMVAEFPKLVKWGERCLQKESVSKSLS DQKEIYEAALQIKQELGIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G114000 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113000 [exp]	1.41	0.9936
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113350 [exp]	2.44	0.9820
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113125 [exp]	3.46	0.9351
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G113400 [exp]	4.47	0.9688
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Potri.002G226700 [exp]	4.58	0.8681
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013501 [exp]	7.41	0.8296
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	8.00	0.8414	Pt-FZF.1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036400 [exp]	10.48	0.8332
AT4G05070			Wound-responsive family protei...		Potri.004G033300 [exp]	11.61	0.8083
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	12.00	0.8343

Compare expression of checked genes

Potri.011G114000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.