Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17160 474 / 6e-168 pfkB-like carbohydrate kinase family protein (.1.2) AT1G66430 70 / 4e-13 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 63 / 7e-11 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 58 / 4e-09 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 57 / 9e-09 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 56 / 1e-08 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 55 / 4e-08 STH pfkB-like carbohydrate kinase family protein (.1) AT5G51830 53 / 1e-07 pfkB-like carbohydrate kinase family protein (.1) AT1G06730 42 / 0.0007 pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089300 [exp] 72 / 9e-14 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 59 / 1e-09 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 58 / 4e-09 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 57 / 7e-09 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 57 / 9e-09 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 55 / 4e-08 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 53 / 1e-07 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G152100 [exp] 42 / 0.0005 AT1G49350 392 / 6e-135 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042467 [exp] 511 / 0 AT1G17160 497 / 6e-177 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026199 [exp] 512 / 3e-179 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10009526 [exp] 66 / 1e-11 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 62 / 2e-10 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 61 / 6e-10 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 58 / 4e-09 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 57 / 7e-09 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 51 / 6e-07 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 51 / 7e-07 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 49 / 5e-06 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF08543 [poplar] [flax] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G114100.1 pacid=42780836 polypeptide=Potri.011G114100.1.p locus=Potri.011G114100 ID=Potri.011G114100.1.v4.1 annot-version=v4.1 ATGAAAGCAGTGTCATTTTCACCAGCAAATCATTGCAACCTTAAACTCCAAAAGTATCCCATAAAACAACCAACACTTGCAAACCCAATTCACTTCAACA ATCACCAAAACCAGAAGCCATCCAACAAAAAACACCACTTTCCTTCATTTTCCATCAAAGCCTCAAAAACCCCTCAAACCCCGTTAACCAAATATCCCAA TACACCACCACTAGTAGTTGTTGGCTCAGCCAATGCAGATATATATGTGGAGATTGATAGATTACCAGCAGAAGGGGAGACCATCTCAGCCAAGACTGGG CAGACTCTTGCTGGTGGCAAAGGAGCTAACCAGGCCGCATGTGGTGCAAAACTTTCATATCCAACATACTTTGTGGGGCAAGTTGGCGAGGATGCACATG GGAAGTTGATCACTGAGGCTTTAAAGAATGGTGGGGTTAATCTTGATTGTGTGAGGAATCTGAGTGATGTGCCTACTGGACATGCTGTGGTGATGCTGCA GCCTGATGGGCAAAATTCTATTATTATTGTTGGTGGAGCTAACATGAGTTGCTGGCCTGAGAAGCTCAGCGATGAGGATTTGGAGGTTGTGAGGAAGGCT GGGGTTGTTTTGCTTCAAAGGGAAATACCTGATTTAGTTAATATTCAAGTGGCAAAGGCTGCAAAAAGCGCTGGTGTTCCTGTTATTTTGGATGCTGGGG GAATGGATGCACCAATGCCCCCTGAATTGTTGAATGTTGTTGACATCTTCAGCCCGAATGAAAGTGAACTTGCACGTTTGACTTGCATGTCAACTGAAAG CTTTGAACAGATTGGTCAGGCTGTCGTTAAGTGTCATAAAATGGGAGTAAAGCAAGTTCTGGTGAAGCTTGGGGCTAAAGGGTCTGCTTTATTCATAGAA GGGGAAAAACCAATTAAACAAACCATAATTTCTGCTGCAAGAGTCCTAGACACTACTGGAGCTGGAGATACCTTTACTGCTGCTTTTGCTGTGGCACTCG TGGAGGGCAAAACAAAGGAGGAATGCATGAGATTTGCTGCTGCAGCAGCTTCTCTCTGTGTTCAAGTGAAGGGAGCCATCCCTAGCATGCCTGACCGGAC ATCAGTTTTACATCTACTCCAAACTGTCTGA
AA sequence Show only first row Show all	>Potri.011G114100.1 pacid=42780836 polypeptide=Potri.011G114100.1.p locus=Potri.011G114100 ID=Potri.011G114100.1.v4.1 annot-version=v4.1 MKAVSFSPANHCNLKLQKYPIKQPTLANPIHFNNHQNQKPSNKKHHFPSFSIKASKTPQTPLTKYPNTPPLVVVGSANADIYVEIDRLPAEGETISAKTG QTLAGGKGANQAACGAKLSYPTYFVGQVGEDAHGKLITEALKNGGVNLDCVRNLSDVPTGHAVVMLQPDGQNSIIIVGGANMSCWPEKLSDEDLEVVRKA GVVLLQREIPDLVNIQVAKAAKSAGVPVILDAGGMDAPMPPELLNVVDIFSPNESELARLTCMSTESFEQIGQAVVKCHKMGVKQVLVKLGAKGSALFIE GEKPIKQTIISAARVLDTTGAGDTFTAAFAVALVEGKTKEECMRFAAAAASLCVQVKGAIPSMPDRTSVLHLLQTV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17160			pfkB-like carbohydrate kinase ...		Potri.011G114100 [exp]	0	1
AT5G08770			unknown protein		Potri.005G069900 [exp]	7.34	0.7142
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	18.05	0.7058
AT5G13610			Protein of unknown function (D...		Potri.010G216300 [exp]	22.97	0.6228
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	23.87	0.6652
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G059000 [exp]	24.85	0.6855
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	36.66	0.6104
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	40.37	0.6535
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Potri.014G071800 [exp]	42.42	0.6274
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G151700 [exp]	44.49	0.6177
AT2G40270			Protein kinase family protein ...		Potri.010G185300 [exp]	54.07	0.6117

Compare expression of checked genes

Potri.011G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.