Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78720 474 / 4e-167 SecY protein transport family protein (.1) AT2G34250 469 / 3e-165 SecY protein transport family protein (.1.2) AT1G29310 469 / 5e-165 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114900 [exp] 695 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.001G387600 [exp] 481 / 5e-170 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G107900 [exp] 480 / 2e-169 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010932 [exp] 479 / 8e-169 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 479 / 8e-169 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10007313 [exp] 476 / 1e-167 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10029262 [exp] 475 / 2e-167 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [poplar] [flax] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Potri.011G114200.2 pacid=42781230 polypeptide=Potri.011G114200.2.p locus=Potri.011G114200 ID=Potri.011G114200.2.v4.1 annot-version=v4.1 ATGGGAATGTATGGTCCTCTAGGACTACTTGGAGTGGGAAATTCTATCCTCATCATTGCACAACTCTGCTTTGCCAGTATCTTAATGATGTGCTTAGATG AACTTCTCCAGATTGGATATGGCCTAGGCTCTGGAATTTCCCTCTTTACGGCAACCCATATGTGTGAAAATGTCATATGGAAATCATTTAGTCCCACCAC TATAAACACTGTTTATGGACCTGAATTTGAAGGTGCTATCCCTGCCTTGTTCCATGGACTGCTAAAACAGAGAAACAAGACGCTAGCTCTCCGAAAAGCC CGTTTCCGAACAAATCTTCCTAATGTTACAAATCTGCTCTCCACAGCCTTTATTTCTCTACTTGCCATCTACTTACAAGGATTCAGTGTGCCTTTGACTG TGACGAGTAATAACCTTAACAGCCGCTTTAGGCAGCGAGGCACGTATCCGATCAAGCTGTTCTATACCTCCAATATGCCCATCATTCTACTCTCGGCATT CATATCAAACATCTATTTTCTCTCTCAGTTACTGTACACGAGATTTGGTGGAAATATTGTTTTGGTGAATCTTCTCGGTAGCTGGAGTGAATCCCAGTAT CCGGCCAGCCATTCTATTCCTGTTGGTGGTCTTGCATATTATATCACCGCACCATCAAGCTTAGCTGATATGGCAGCCAGTCCCATGCGGGCACTTTTTT ATCTAGTGTTCATGTTATTTGCATGTGCATGGTTCTCAAGAAAATGGACTGAAGTTTCTGGATCCTCTGCTAAAGATGTTGCTAAACAGCTCAAGGATCA AAAAATGGTAATGCCGGGTTATCGCGAAGGGCAGTTAGAAGCCGTGCTGAACCGCCACATACCCGTAGCTGCAGCATTTGGAGGAATGTGCCTTGGTGCC TTGACAGTGTCCGCAGATATGATGGGTGCAATTGGTTCGGGGACAGGAGTTCTTCTTGCTGTCAGCGTCATATATCAGTATTTTGAGATGTTCGACAAAG AGAGAGTCAGTTTGTTCGGTTCTTTAGGGTTCTAA
AA sequence Show only first row Show all	>Potri.011G114200.2 pacid=42781230 polypeptide=Potri.011G114200.2.p locus=Potri.011G114200 ID=Potri.011G114200.2.v4.1 annot-version=v4.1 MGMYGPLGLLGVGNSILIIAQLCFASILMMCLDELLQIGYGLGSGISLFTATHMCENVIWKSFSPTTINTVYGPEFEGAIPALFHGLLKQRNKTLALRKA RFRTNLPNVTNLLSTAFISLLAIYLQGFSVPLTVTSNNLNSRFRQRGTYPIKLFYTSNMPIILLSAFISNIYFLSQLLYTRFGGNIVLVNLLGSWSESQY PASHSIPVGGLAYYITAPSSLADMAASPMRALFYLVFMLFACAWFSRKWTEVSGSSAKDVAKQLKDQKMVMPGYREGQLEAVLNRHIPVAAAFGGMCLGA LTVSADMMGAIGSGTGVLLAVSVIYQYFEMFDKERVSLFGSLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	0	1
AT5G58200			Calcineurin-like metallo-phosp...		Potri.018G111500 [exp]	3.00	1.0000
					Potri.001G174350 [exp]	4.24	0.9684
					Potri.012G136500 [exp]	5.09	0.9168
AT5G26330			Cupredoxin superfamily protein...		Potri.004G171100 [exp]	8.48	0.8294
AT5G28780			PIF1 helicase (.1)		Potri.007G048501 [exp]	9.74	0.8283
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Potri.013G147400 [exp]	12.00	0.6722
					Potri.002G113501 [exp]	13.96	0.6593
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Potri.015G079200 [exp]	14.49	0.6948
AT2G32835		RALFL16	RALF-like 16 (.1)		Potri.018G007800 [exp]	15.00	0.6419
					Potri.004G151450 [exp]	17.88	0.8097

Compare expression of checked genes

Potri.011G114200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.