Plant FIBer expression Database

Potri.011G114300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53670 230 / 2e-77 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2)
AT4G04830 102 / 8e-28 ATMSRB5 methionine sulfoxide reductase B5 (.1.2)
AT4G04800 102 / 2e-27 ATMSRB3 methionine sulfoxide reductase B3 (.1)
AT4G21850 100 / 4e-27 ATMSRB9 methionine sulfoxide reductase B9 (.1.2)
AT4G21840 99 / 2e-26 ATMSRB8 methionine sulfoxide reductase B8 (.1)
AT4G21830 99 / 2e-26 ATMSRB7 methionine sulfoxide reductase B7 (.1.2)
AT4G21860 99 / 6e-26 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3)
AT4G04840 96 / 3e-25 ATMSRB6 methionine sulfoxide reductase B6 (.1)
AT4G04810 92 / 6e-24 ATMSRB4 methionine sulfoxide reductase B4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G198600
[exp]
99 / 1e-26 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2)
Potri.009G080700
[exp]
99 / 7e-26 AT4G21860 253 / 7e-86 methionine sulfoxide reductase B 2 (.1.2.3)
Potri.001G286500
[exp]
99 / 2e-25 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013727
[exp]
221 / 1e-73 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2)
Lus10005593
[exp]
218 / 2e-72 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2)
Lus10020486
[exp]
98 / 2e-25 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
Lus10009574
[exp]
95 / 4e-25 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2)
Lus10007105
[exp]
96 / 1e-24 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0080 Beta-tent PF01641 SelR SelR domain
Representative CDS sequence
>Potri.011G114300.6 pacid=42781159 polypeptide=Potri.011G114300.6.p locus=Potri.011G114300 ID=Potri.011G114300.6.v4.1 annot-version=v4.1
ATGGCTTTGAGTCATAGCAGTATAAGCTTAACAACAACATTAACTTCCATTTCTTCAAAAACCCAATTTGTTATTTCTCCAAAAACCAACCCTTTTTCCT
TAGATTCTAGTTGCTTTAAACTGTACAAAAGAAGCTCCTTTTCTGTTCGAGCTATGGGTTCTTCTGCTTCTTCTTCTCAGAAGCCTGACAACACTCAAGG
AGATGTTAACTATGCCTCCGTGAGCGATGGAGAATGGAAGAAGAAGCTTACAGCCGAAGAGTTTTACGTCACTCGGCAGAAGGGGACTGAGAGAGCTTTC
TCTGGAGAGTATTGGAACACCAAAACCCCGGGAACTTACCACTGCATCTGTTGTAATACACCTCTATTTGAATCATCCACTAAATTTGACAGTGGAACTG
GTTGGCCATCTTACTATCAGCCCATAGGAAATAATGTGAAGTCAAAGTTAGACTTGTCGATTATTTTCATGCCTCGTCAGGAAGTTCTCTGCGCGGCTTG
TGATGCTCATCTAGGGCATGTATTTGATGATGGTCCACCACCTACTGGTAAACGTTATTGTATCAATAGGTACGTATTTCTTCCTGTCCGGAGCTCTTAA
AA sequence
>Potri.011G114300.6 pacid=42781159 polypeptide=Potri.011G114300.6.p locus=Potri.011G114300 ID=Potri.011G114300.6.v4.1 annot-version=v4.1
MALSHSSISLTTTLTSISSKTQFVISPKTNPFSLDSSCFKLYKRSSFSVRAMGSSASSSQKPDNTQGDVNYASVSDGEWKKKLTAEEFYVTRQKGTERAF
SGEYWNTKTPGTYHCICCNTPLFESSTKFDSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDDGPPPTGKRYCINRYVFLPVRSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Potri.011G114300
[exp]
0 1
AT2G16800 high-affinity nickel-transport... Potri.009G135600
[exp]
3.16 0.9289
AT2G24390 AIG2-like (avirulence induced ... Potri.018G003000
[exp]
3.46 0.9404
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Potri.012G125900
[exp]
8.54 0.8950
AT5G27100 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE... Potri.006G268450
[exp]
8.71 0.9213
AT4G27600 NARA5 GENES NECESSARY FOR THE ACHIE... Potri.013G078600
[exp]
9.27 0.9407
AT1G52590 Putative thiol-disulphide oxid... Potri.008G213200
[exp]
9.94 0.9121
AT5G04830 Nuclear transport factor 2 (NT... Potri.010G241700
[exp]
12.64 0.9082
AT1G22850 SNARE associated Golgi protein... Potri.013G099600
[exp]
12.84 0.9402
AT4G28740 unknown protein Potri.014G194500
[exp]
13.11 0.9399
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G268500
[exp]
14.49 0.9080

Potri.011G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.