Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 44 / 2e-05 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G12880 39 / 0.0007 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G15750 39 / 0.0008 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209800 [exp] 44 / 2e-05 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.007G108301 [exp] 40 / 0.0003 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.007G068300 [exp] 39 / 0.0007 AT4G00872 113 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038738 [exp] 41 / 0.0002 AT5G64620 67 / 4e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Lus10002738 [exp] 39 / 0.0009 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10038737 [exp] 39 / 0.0009 AT5G64620 56 / 7e-10 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.011G114700.1 pacid=42782159 polypeptide=Potri.011G114700.1.p locus=Potri.011G114700 ID=Potri.011G114700.1.v4.1 annot-version=v4.1 ATGGAGTCCTGCAGTCTTCTAGTTCTCTCTCTCTCCCTCTTAACCTTGTCTTATCAGTTTCTGGCCATAAAATCTGATGAGGCTTTGATCCAAAACCTAT GTCACAAAACACCAGAACCAGTCCTTTGCGCAGATTGCCTCCATGGTGATCCTAGCGGCAAGGCTGCAGATGCTAGGAGAGTAGCACTGATAACAGTGCG CTGTGCCGAATACGATGCCGAACAAGTATATAATTTCACGTTCAACCTCTGGCAGAACACTCCCAAATCAAATGCTGCACTGTACAACATCCTTGACACA TGTTCAAGCCAGTTTCTCGTGGCACATGATAGTTTTCGCGGCGCCACGGTTGCCCTTGAAGATCAGGGGTGGCGTAATTGGCGTGGGACGGCCATTTATG AATTAACCACTCAAGTCACTCCTTACCTGAACCGCTGCCTGGACCTCTTCAAAAAGCAACCGCAGCTTCCATTGCCAAACACTATCTTGGTCGGGACTAA TGCTGTCAACCAAGGCATTGCAATTAGCTTGGGGATTTTGAAGAATATTCCTGATAAGTTAACCCGCTCATAA
AA sequence Show only first row Show all	>Potri.011G114700.1 pacid=42782159 polypeptide=Potri.011G114700.1.p locus=Potri.011G114700 ID=Potri.011G114700.1.v4.1 annot-version=v4.1 MESCSLLVLSLSLLTLSYQFLAIKSDEALIQNLCHKTPEPVLCADCLHGDPSGKAADARRVALITVRCAEYDAEQVYNFTFNLWQNTPKSNAALYNILDT CSSQFLVAHDSFRGATVALEDQGWRNWRGTAIYELTTQVTPYLNRCLDLFKKQPQLPLPNTILVGTNAVNQGIAISLGILKNIPDKLTRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.011G114700 [exp]	0	1
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091900 [exp]	1.00	0.6500
AT1G74220			unknown protein		Potri.012G061700 [exp]	5.47	0.5331
					Potri.018G031250 [exp]	34.85	0.4072
AT3G15370		ATHEXPALPHA1.24...	expansin 12 (.1)		Potri.001G401700 [exp]	46.04	0.4562
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Potri.009G055500 [exp]	50.24	0.4107
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	54.77	0.4505
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	62.83	0.3862
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	65.17	0.4114
AT1G57775			Protein of unknown function (D...		Potri.004G115201 [exp]	79.30	0.3532
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	84.49	0.4054

Compare expression of checked genes

Potri.011G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.