Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78720 671 / 0 SecY protein transport family protein (.1) AT2G34250 665 / 0 SecY protein transport family protein (.1.2) AT1G29310 664 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G114200 [exp] 695 / 0 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1) Potri.001G387600 [exp] 676 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G107900 [exp] 674 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010932 [exp] 674 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 674 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10007313 [exp] 669 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10029262 [exp] 669 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00344 [poplar] [flax] SecY SecY translocase PF10559 [poplar] [flax] Plug_translocon Plug domain of Sec61p
Representative CDS sequence Show only first row Show all	>Potri.011G114900.1 pacid=42781902 polypeptide=Potri.011G114900.1.p locus=Potri.011G114900 ID=Potri.011G114900.1.v4.1 annot-version=v4.1 ATGGGGAGTGGATTTAGTGTTCTAAAACTAGTCAAACCATTCCTTCCGTTCATACCGGAAGTGCAGCGTCCTGTCAATGTGGTTCCTTTCAGGGTGAAGG CCATGTACACTGGGATCTCTCTCGTCATTTTCTTGGCCTGCAGCCAGCTTCCCCTCTATGGCATACACTCCACAACAGGTGCAGATCCAATGCACTGGAT GCGTGCTATTCTTGCTTCAAGCCGTGGGACTGTCATGGAGCTCGGAATAGGTCCTCTTGTGACTTCCGGGATGGTGATGCAGTTTTTAGCTGGTTCAAAG TTGATTAAAGTAAACAAAGATGTTCGTGAAGATCGCGCACTTCTAAAGGCTGCAGAAAAGTTCTTGAGCATTTTGATAGCTATTGGTCAAGCTGCTGCAA ACCTTTTCATGGGAATGTATGGTCCTCTAGGACTACTTGGAGTGGGAAATTCTATCCTCATCATTGCACAACTCTGCTTTGCCAGTATCTTAATGATGTG CTTAGATGAACTTCTCCAGATTGGATATGGCCTAGGCTCTGGAATTTCCCTCTTTACGGCAACCCATATGTGTGAAAATGTCATATGGAAATCATTTAGT CCTACCACTATAAACACTGTTTATGGACCTGAATTTGAAGGTGCTATCCCTGCCTTGTTCCATGGACTGCTAAAACAGAGAAACAAGACGCTAGCTCTCC GAAAAGCCCTTTTCCGAACAAATCTTCCTAATGTTACAAATCTGCTCTCCACAGCCTTTATTTCTCTACTTGCCATCTACTTACAAGGATTCAGTGTGCC TTTGACTGTGACGAGTAATAACCTTAACAGCTGCTTTAGGCAGCGAGGCACGTATCCGATCAAGCTGTTCTATACCTCCAATATGCCCATCATTCTACTC TCGGCATTCATATCAAACATCTATTTTCTCTCTCAGTTACTGTACACGAGATTTGGTGGAAATATTGTTTTGGTGAATCTTCTCGGTAGCTGGAGTGAAT CCCAGTATCCGGCCAGCCATTCTATTCCTGTTGGTGGTCTTGCATATTATATCACTGCACCATCAAGCTTAGCTGATATGGCAGCCAGTCCCATGCGGGC ACTTTTTTATCTAGTGTTCATGTTATTTGCATGTGCATGGTTCTCAAGAAAATGGACTGAAGTTTCTGGATCCTCTGCTAAAGATGTTGCTAAACAGCTC AAGGATCAAAAAATGGTAATGCCGGGTTATCGCGAAGGGCAGTTAGAAGCCGTGCTGAACCGCCACATACCCGTAGCTGCAGCATTTGGAGGAATGTGCA TTGGTGCCTTGACAGTGTCCGCAGATATGATGGGTGCAATTGGTTCGGGGACAGGAGTTCTTCTTGCTGTCAGCGTCATATATCAGTATTTTGAGATGTT CGACAAAGAGAGAGTCAGTTTGTTCGGTTCTTTAGGGTTCTAA
AA sequence Show only first row Show all	>Potri.011G114900.1 pacid=42781902 polypeptide=Potri.011G114900.1.p locus=Potri.011G114900 ID=Potri.011G114900.1.v4.1 annot-version=v4.1 MGSGFSVLKLVKPFLPFIPEVQRPVNVVPFRVKAMYTGISLVIFLACSQLPLYGIHSTTGADPMHWMRAILASSRGTVMELGIGPLVTSGMVMQFLAGSK LIKVNKDVREDRALLKAAEKFLSILIAIGQAAANLFMGMYGPLGLLGVGNSILIIAQLCFASILMMCLDELLQIGYGLGSGISLFTATHMCENVIWKSFS PTTINTVYGPEFEGAIPALFHGLLKQRNKTLALRKALFRTNLPNVTNLLSTAFISLLAIYLQGFSVPLTVTSNNLNSCFRQRGTYPIKLFYTSNMPIILL SAFISNIYFLSQLLYTRFGGNIVLVNLLGSWSESQYPASHSIPVGGLAYYITAPSSLADMAASPMRALFYLVFMLFACAWFSRKWTEVSGSSAKDVAKQL KDQKMVMPGYREGQLEAVLNRHIPVAAAFGGMCIGALTVSADMMGAIGSGTGVLLAVSVIYQYFEMFDKERVSLFGSLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78720			SecY protein transport family ...		Potri.011G114900 [exp]	0	1
					Potri.006G228650 [exp]	10.95	1.0000
					Potri.011G074033 [exp]	11.66	1.0000
AT5G12460			Protein of unknown function (D...		Potri.001G256200 [exp]	12.48	1.0000
					Potri.003G054301 [exp]	12.96	1.0000
					Potri.012G134051 [exp]	13.41	1.0000
					Potri.014G065100 [exp]	13.41	0.8511
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.004G179457 [exp]	15.16	0.9318
AT5G15948		CPuORF10	conserved peptide upstream ope...		Potri.017G108901 [exp]	16.00	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Potri.004G034500 [exp]	16.97	0.9825
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Potri.013G012666 [exp]	21.79	0.8757

Compare expression of checked genes

Potri.011G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.