Plant FIBer expression Database

Potri.011G115000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57850 365 / 1e-125 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
AT3G05190 72 / 1e-13 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
AT5G27410 68 / 3e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G039000
[exp]
364 / 4e-125 AT5G57850 473 / 2e-167 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013676
[exp]
536 / 0 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Lus10011382
[exp]
382 / 3e-132 AT5G57850 476 / 2e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Lus10006441
[exp]
379 / 8e-131 AT5G57850 474 / 6e-168 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Lus10035342
[exp]
66 / 1e-11 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Lus10029984
[exp]
52 / 5e-07 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01063 Aminotran_4 Amino-transferase class IV
Representative CDS sequence
>Potri.011G115000.2 pacid=42782235 polypeptide=Potri.011G115000.2.p locus=Potri.011G115000 ID=Potri.011G115000.2.v4.1 annot-version=v4.1
ATGGCTTCCTTGGAGGTTGAAAGTGGAAGTGGTATCAAGGTTCACGTGTTTTCATCATCCTCAGAGTTGCTTGAAAGCCTGCATGAGAAGTGGGGTTCAG
TGAAAAAGCAACCATACCCAGCAATGTATTCCAGTGTATATGGCGGAATTATTCTCGATCCAGCAATGATGGTAATACCCATAGATGATCACATGGTTCA
TAGAGGGCATGGTGTGTTTGATACGGCTATCATTCTTGATGGGCATCTGTATGAGCTGGATGTTCATTTAGACCGCTTTTTAAGATCAGCATCAAAAGCA
AGGATAGCCTCTCCCTTCCCTTGTTCAACTCTTCGAAGCATTCTTATTCAATTGGCTGCGGCATCTAAATGCAAGAAAGGAACTCTAAGATACTGGCTAA
GTGCAGGTCCTGGAAACTTCTTACTCTCGCCTGCAGGTTGTCCAACTTCTGCATTCTATGCTGTAGTCATTGATGAGGACTTCTCTCAGCGCAAAGAAGG
GGTTAAAGTGATAACATCCACAATCCCTATGAAGTCACCTATGTTTGCAACAATGAAGAATGTGAACTACCTCCCGAATGTGCTATCAGTAATGGAAGCT
GAAGATCAGGGAGCATTTGCCTCCATCTGGATTGATGAGGAAGGCTATATTGCAGAGGGTCCAAATGTGAATGTGGCTTTCATAAGTCAAGATAAGGAGC
TTATCTTGCCTATTTTCGACAAAATCCTGAGCGGACGCACTGCATTGAGGCTTCTTCAGCTAGCGCCTAAATTGATCGAGCAAGGGCGATTAAAAAGTGT
TAAAACTGGAAATCTTACTGTGGAGGAAGCCAAAGGGGCTGCTGAAATGATGTATGTCGGAAGCACACTTCCTATATTGCCAATTGTCATGTGGGATGAG
CAACCTATAGGAGACGGGAAGGTGGGAGAGCTGACAATGGCACTCTCTGATCTTCTTTGGGATGACATGGTTGCTGGCCCTGCCACCCTGAGGATTCCTG
TTCCTTACGAGGAGTGA
AA sequence
>Potri.011G115000.2 pacid=42782235 polypeptide=Potri.011G115000.2.p locus=Potri.011G115000 ID=Potri.011G115000.2.v4.1 annot-version=v4.1
MASLEVESGSGIKVHVFSSSSELLESLHEKWGSVKKQPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGHLYELDVHLDRFLRSASKA
RIASPFPCSTLRSILIQLAAASKCKKGTLRYWLSAGPGNFLLSPAGCPTSAFYAVVIDEDFSQRKEGVKVITSTIPMKSPMFATMKNVNYLPNVLSVMEA
EDQGAFASIWIDEEGYIAEGPNVNVAFISQDKELILPIFDKILSGRTALRLLQLAPKLIEQGRLKSVKTGNLTVEEAKGAAEMMYVGSTLPILPIVMWDE
QPIGDGKVGELTMALSDLLWDDMVAGPATLRIPVPYEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57850 D-aminoacid aminotransferase-l... Potri.011G115000
[exp]
0 1
AT2G22620 Rhamnogalacturonate lyase fami... Potri.006G218500
[exp]
4.35 0.7282
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.011G005300
[exp]
9.48 0.7424
AT5G37490 ARM repeat superfamily protein... Potri.010G103100
[exp]
10.63 0.7743
AT5G23350 GRAM domain-containing protein... Potri.004G068150
[exp]
26.73 0.7416
AT3G57120 Protein kinase superfamily pro... Potri.010G224900
[exp]
29.39 0.6564
AT5G48100 LAC15, TT10, AT... TRANSPARENT TESTA 10, LACCASE-... Potri.011G071100
[exp]
29.79 0.7549
AT3G01420 PADOX-1, ALPHA-... plant alpha dioxygenase 1, alp... Potri.008G106400
[exp]
32.63 0.7333 Pt-PIOX.1
AT3G59080 Eukaryotic aspartyl protease f... Potri.005G204600
[exp]
45.55 0.7228
AT1G14550 Peroxidase superfamily protein... Potri.010G236850
[exp]
52.99 0.7297
AT3G59880 unknown protein Potri.007G145500
[exp]
68.62 0.7306

Potri.011G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.