Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15200 546 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 252 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80550 234 / 3e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 201 / 5e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 199 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 198 / 4e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 184 / 8e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 184 / 1e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 175 / 3e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22670 175 / 6e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053600 [exp] 270 / 8e-83 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 211 / 2e-60 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G147200 [exp] 205 / 3e-60 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 199 / 6e-57 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 189 / 1e-53 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 180 / 6e-50 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 176 / 1e-48 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 174 / 2e-47 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 171 / 7e-46 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031837 [exp] 574 / 0 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 248 / 2e-74 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 222 / 2e-64 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 214 / 2e-61 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 186 / 3e-52 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037555 [exp] 179 / 3e-50 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 179 / 7e-50 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031270 [exp] 166 / 2e-49 AT3G15200 147 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011459 [exp] 178 / 3e-49 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011439 [exp] 176 / 3e-49 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.011G115500.1 pacid=42781185 polypeptide=Potri.011G115500.1.p locus=Potri.011G115500 ID=Potri.011G115500.1.v4.1 annot-version=v4.1 ATGACAGTGCCTCTCGTATTCCGATCGTTGAAAATCATTTGCCGGCAAAACATCCTCCGGAAATTCAAATTTGAATTCCCAATAAAACCCACAAAAACCC TTGTCTACTACACTCACAATCTTCAATTCCAGAATACTCAAAATCACTTTCAAAATTCCATCTTTCAATCAAAAACTTCTCGCTCTATTCACTCGCTTGA AAATTCTCACTCACTCGCTGAAAAACAGCAAGACCCTGATAGTGAACTAGCAATTAGAGTACAAAACACCCTCAAGAAATATAGAGACAGCCCAGCGAGG AAGATTGAGCTCGCTCTTGACCTGTGCTGCTCCACAATGACACAGGACTTAGTTTTAAAGGTACTAAAGAGGCACCGCTCTGATTGGAAACCAGCTTATA TATTCTTTAATTGGGTTTCTAAAGAAGGTACAATTTCACTTAGCTCTTGTGTTTACAATGAGATTCTTGATATTCTTGGTAGAATGAGAAGGTTTGAAGA ACTCACACTGGTGCTCGACGAAATGTCTAAAAGAGAGGGATTTGTTGACGAGGACACATATAGGGTTTTGGTTAATAGATATGCCGGTGCACATATGGTG GAAGAGGCAATAGGGGCCTTTAATAAGAGGAGAGAGTTGGGTCTAGAACTTGATCTGGTTTCTTTCCAAAAGCTTTTGATGTATTTGTGTAGGTATAAAC ATGTAGATGTAGCGGAAACTTTGCTGCATAGCAAGGGACATGAGTTTGGTGTCGATATAAAGACTATGAATATTGTTCTAAATGGGTGGTGTGTGCTGGG AAATGTACGAGAGGCAAAGAGGTTTTGGAAAGATATAATTGCCTCTAAATGCAAGCCGGATGTGTTTACTTATGGAACTTTTATAAAGGCGTTGACGAAC AAGGGAAAATTAGGGACGGCAATGAAGTTGTATGAGGCAATGTGGAAGATGCAATGCAAGCCAGATGTGGTGATTTGTAATTGTGTGATTGATGCACTTT GCTTCAAGAAGAGGGTTCCTGAAGCTTTGGCTGTTTTTGAGGGAATGAAAGAGCGAGGTTGCATTCCCAATGTAGCGACCTACAACTCTCTTATCAAGCA TATGTGCAAGATTGGGAGGATGGAGAAGGTGTATGAGCTTTTGGATGAAATGCAGGAGAAGAAAGGCAGTTGTATGCCCGATGAGATAACTTTCAATTAC CTGCTTAAGTCATTGAAGAAACCTGAGGAAGTTGCTGGTGTTCTGGAGAGGATGAAGATAAATGGATGCAAGATGAATAACGATACATGTAATTTGTTAT TGAAATTGCATGCGGATTGGGATTCCGAGGAAAAAGTAAGATATACTTGGGAGGAGATGGAGAAAAATGGGCTGGGACTGGATCGGCGATCCTACACTAT TATGATACACTGGCTCTATGACAAGGGAAGGGTTGAGGATGCGTTGCGTTATTTTGGCGAGATGGAAAATAAGGGAATGGTGCCAGAGCCCAGGACTAAG ATATTGTGCAATTCCATGAATACGAGGAAACAGAAAGAAGCAGAAGAAGGGGAAAAAAGTGCAAAGAATAATGATCAATCGCCAAGGTCTTCCCATGAAA GAAATACGAAGAAAAAAGTCAATTCGGTTCAATTTTAA
AA sequence Show only first row Show all	>Potri.011G115500.1 pacid=42781185 polypeptide=Potri.011G115500.1.p locus=Potri.011G115500 ID=Potri.011G115500.1.v4.1 annot-version=v4.1 MTVPLVFRSLKIICRQNILRKFKFEFPIKPTKTLVYYTHNLQFQNTQNHFQNSIFQSKTSRSIHSLENSHSLAEKQQDPDSELAIRVQNTLKKYRDSPAR KIELALDLCCSTMTQDLVLKVLKRHRSDWKPAYIFFNWVSKEGTISLSSCVYNEILDILGRMRRFEELTLVLDEMSKREGFVDEDTYRVLVNRYAGAHMV EEAIGAFNKRRELGLELDLVSFQKLLMYLCRYKHVDVAETLLHSKGHEFGVDIKTMNIVLNGWCVLGNVREAKRFWKDIIASKCKPDVFTYGTFIKALTN KGKLGTAMKLYEAMWKMQCKPDVVICNCVIDALCFKKRVPEALAVFEGMKERGCIPNVATYNSLIKHMCKIGRMEKVYELLDEMQEKKGSCMPDEITFNY LLKSLKKPEEVAGVLERMKINGCKMNNDTCNLLLKLHADWDSEEKVRYTWEEMEKNGLGLDRRSYTIMIHWLYDKGRVEDALRYFGEMENKGMVPEPRTK ILCNSMNTRKQKEAEEGEKSAKNNDQSPRSSHERNTKKKVNSVQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15200			Tetratricopeptide repeat (TPR)...		Potri.011G115500 [exp]	0	1
AT4G29560			unknown protein		Potri.006G151500 [exp]	3.00	0.7343
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	5.19	0.7544
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	8.83	0.7449
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Potri.003G119700 [exp]	12.04	0.6090
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	12.96	0.7285
					Potri.012G028432 [exp]	15.16	0.7165
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	18.13	0.6938
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	22.97	0.6875
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	23.66	0.6750
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Potri.008G023800 [exp]	28.56	0.6477

Compare expression of checked genes

Potri.011G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.