Plant FIBer expression Database

Potri.011G115900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53930 83 / 2e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G397001
[exp]
503 / 7e-173 AT5G53930 81 / 7e-16 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G115900.2 pacid=42781832 polypeptide=Potri.011G115900.2.p locus=Potri.011G115900 ID=Potri.011G115900.2.v4.1 annot-version=v4.1
ATGGGAAAATCTTCTTCTTCTATCAGAAAGAAACGCTCCAAATATTCCTCTCAGGGTCGTGCAAGGAAGAAAAAAGATACTAGGAGAAGTAAATCAAAGA
GGCTGCGGCGTCGTGACGGGTCTTATTCGGATGATGATTCGAGAAGTTCACTGTCTGTCTCATCTTTTGATTCTGAGGATAGTTTCAGAAGGAGAAGGTC
TAGGTCTCGCACTAGAAAGGATGTGAAGGGGACTAAAAAGAGGGCTCGGTCTTCTAGCAGTGAGGAGTCTCCTCATGCGAGAAAGCGAAAAGGGTCCAAA
AGAATTGGTGAGAGGAAGAAAATGCATGAGAAGAAGACAAAGAAGAGGAGGAAGAAGAAGGGTAGGAGAGATTCAAGTGTTAGTTCTAGTAGTGGTGAGT
CTCGGAGCTGTTCAACTTGTCAGAGTCAGAGTGATGAGAGTGAATATGAGAGGTGTAAGGGCAGGCCTGAAAGAAGAGATGATGAAAAACGAAAATCAGA
GAATATTAGAAGTGGAGCTAAAAGGAGGAGATACAGATCAGGAAGTTGTTCTTCATGTAGTAGACATGATGATAGTAGTGATTTTTTGATGTCAAACATA
ATGACTGGTGAGAACACCTCAAAGCGGCTGAGGTCCATTATTATTCTTCCAGGGGAGGATAGCGAGGTCAGAGAATTGGACAAGGATAAGCATAAAGAGG
AGATAACATATGATCATGATGATTATCCTTCTTCTAGAAGCAATGATAGTAATGATGGGCTAAATAACATGGAGGAAAGGCCTATAGAGGATGAGAAAAG
AGAAGATGCTGCTGCTTCCAATAGTAAAGCCATTGAACTCACAGAAAGTAACAAGGTTGGAGAGGGTCAACATACTAGAAATAAGCCTGGCTATGACGTT
GGCAGGGTTGGGACAAATGATACTAAAAAGGAACAGAATGATGTTTCGGGGGTCATTGTTAATACTGCGAATGTTGATGATTTGGAGACAGTTTTAAGAC
AAAAGGCTTTGGAAAATCTAAAAACTTTCCGAAGTGGACTTGGAGGGTTCCAAACAAATGCAAAGAGTGCTGTTATTCAGAAGGATAAGCGTGATGGTAC
TGCCCAATCACCATTTTCTGTGATGCCTGAACTAGGCCAAACTAAAATCCCCAAGGTTGTTGGTACTAGAATGGCGGGAGAAGATTCTGCTCATTCATCA
CTAAACGAGAAGATTCCTGATGGAGGGATTTGTGGCAGTGAATCTTGCTCTGCTAAGAATAATGTTCATCCACCTGACCAGGTGGCTATTCCTGGCAGAG
AAAAGGTTAGTACATTTGCTAGTTCTAGTAAAAACAAACCACGGTTGATTACATCAGCATCGAGGAAAGCATTATCAAATGTTACTACCACCCTGAAAGA
AACACCAGCTTCACGGGAAACCAATCAGCCAAAGTTGGCGAGTGGCACTAGCATAGGTAGGAGTGTTACCCTGAAAGAAACACCTGCTTCATGTGAAGCC
AATCAGGCAAAGTTGTCGATTGGGATTAGCTTTGGTAAGAGTGTCACCTTGAAAGAAACACCTGCCTCCCTGGAAGCCAGTCAGGCAAAGTTGGTGAGTG
GGATTAAAGTATGTAAGAATGCCATACATGGTGATCACACTGTCACCCCTCCCACAGGCACTGACAATGATGACAGAGCTAATGATTCCTCTGTTTCTGA
TCCTGCTGAGCCTTCCTCGTGCCTTAGATCTGCAGCAGGAGATATTAGCTTGAATGAATCACAAGATGAAGGCAAGGAAGGCACGCAGCTGGAACAGAAG
ACAATGTCTGTGATGCGGGGTGGGGAAATGGTACAGGTGAACTACAAGGTCTACATTCCTAAGAAAACCCCTGCTTTGGCTAGGAGGCAACTCAAGCGGT
GA
AA sequence
>Potri.011G115900.2 pacid=42781832 polypeptide=Potri.011G115900.2.p locus=Potri.011G115900 ID=Potri.011G115900.2.v4.1 annot-version=v4.1
MGKSSSSIRKKRSKYSSQGRARKKKDTRRSKSKRLRRRDGSYSDDDSRSSLSVSSFDSEDSFRRRRSRSRTRKDVKGTKKRARSSSSEESPHARKRKGSK
RIGERKKMHEKKTKKRRKKKGRRDSSVSSSSGESRSCSTCQSQSDESEYERCKGRPERRDDEKRKSENIRSGAKRRRYRSGSCSSCSRHDDSSDFLMSNI
MTGENTSKRLRSIIILPGEDSEVRELDKDKHKEEITYDHDDYPSSRSNDSNDGLNNMEERPIEDEKREDAAASNSKAIELTESNKVGEGQHTRNKPGYDV
GRVGTNDTKKEQNDVSGVIVNTANVDDLETVLRQKALENLKTFRSGLGGFQTNAKSAVIQKDKRDGTAQSPFSVMPELGQTKIPKVVGTRMAGEDSAHSS
LNEKIPDGGICGSESCSAKNNVHPPDQVAIPGREKVSTFASSSKNKPRLITSASRKALSNVTTTLKETPASRETNQPKLASGTSIGRSVTLKETPASCEA
NQAKLSIGISFGKSVTLKETPASLEASQAKLVSGIKVCKNAIHGDHTVTPPTGTDNDDRANDSSVSDPAEPSSCLRSAAGDISLNESQDEGKEGTQLEQK
TMSVMRGGEMVQVNYKVYIPKKTPALARRQLKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53930 unknown protein Potri.011G115900
[exp]
0 1
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.001G253400
[exp]
2.23 0.8969
AT3G05670 RING/U-box protein (.1) Potri.005G021000
[exp]
2.23 0.8482
AT1G04300 TRAF-like superfamily protein ... Potri.008G163300
[exp]
2.44 0.8638
AT2G16940 Splicing factor, CC1-like (.1.... Potri.009G137200
[exp]
5.65 0.8701
AT1G15280 CASC3/Barentsz eIF4AIII bindin... Potri.003G056500
[exp]
6.32 0.8313
AT5G53220 unknown protein Potri.014G039200
[exp]
8.83 0.8449
AT2G23460 ATXLG1, XLG1 extra-large G-protein 1 (.1) Potri.005G131200
[exp]
12.00 0.7688 XLG.1
AT1G33360 ATP-dependent Clp protease (.1... Potri.013G089500
[exp]
12.64 0.7317
AT5G04290 SPT5L, KTF1 SPT5-LIKE, kow domain-containi... Potri.008G032800
[exp]
14.14 0.8321
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
14.42 0.8070

Potri.011G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.