Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53920 341 / 9e-116 ribosomal protein L11 methyltransferase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022389 [exp] 371 / 6e-127 AT5G53920 312 / 4e-104 ribosomal protein L11 methyltransferase-related (.1) Lus10005914 [exp] 177 / 1e-53 AT5G53920 166 / 1e-49 ribosomal protein L11 methyltransferase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05175 [poplar] [flax] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Potri.011G116100.1 pacid=42781157 polypeptide=Potri.011G116100.1.p locus=Potri.011G116100 ID=Potri.011G116100.1.v4.1 annot-version=v4.1 ATGTCAAGGAGTCATTTCTTCAAACACCTATCGTACACTCTCGTTCACCACCACCGCCCATCATATCTTTCTCCTCCACTCTCGGTTTACAAATTTCCAC ATCGATGGAAGAAACCCAGCTCTTCCTCACTCTTCTCAAAATCTCCCATTTCTTCTTCTTCTTCTTCATCACTCTTCTCTTCTTCTTCAGTCACCGCCTC GCCCTCAACAACAACAAGTGAATCCTATGCTTACCTTTCTGTTCTCATTCGATGCCCCAAACATGTCGCTGATAGCCTTTCAGAGGCCCTTTTATGTTTT GGTGCCAGTTCTACAAGTATGGATGAAGATGATGACTTTGATGGTTCTAATGAGGTCTGCATTGATTCCATATTTCCTGAATTTGAAGATGTGGACATGT GCCTTTCACAAGCAGCCAATTCCATTGGCTTGAAAGAGACACCCCCTTATGAGGTTAATCTTGGGGATCAATATGAATGGGTTCGGAAAACTCAGGAATC ATTTCATCCAGTTGAAGTAACTGAAGGACTTTGGATTGTGCCCGAGTGGAGATCCCCCCCTGATGTTCAAGCAACAAATATAATCCTGAATCCTGGATTA GCTTTTGGAACCGGGGAGCACCCTACTACTAAGTTATGTCTGTTGCTACTAAAAAAGTTAATAAAGGGCGAAGAACTTTTCTTGGATTATGGCACAGGTT CTGGAGTTCTTGCAATTGCAGCACTGAAGTTTGGTGCTGCTTTATCAGTTGGATTTGATATAGATCCTCAAGCAATCATGTCTGCACGTCATAATGCCAC TCTGAACAGTATAGGACCTGAGACAATGGAATTGCACCTGGTTCCTGGCAAAACCTGCTCCTCCTTGGATGGAAGAGAAGATGAAATGGTGAAAGAGCAG AGCTGTTGCGGAACTGGAGTCATCTCTGGAACAGAGAAATATGATGTGGTCATTGCTAATATTCTCTTGAATCCTCTCTTGGATTTGGCAGATCATATTG TTTCTTATGCTAAACCTTGGGCAGTTGTTGGCATTTCTGGTATTATATCCGAGCAGTGCTCATGTATTGTGGATCGGTATTCAATGCTCTTGGAAGACAT ATCAGTGTCAGAGATGGATGGTTGGGCCTGTGTAAGTGGAAGGAAGAAAATTTAG
AA sequence Show only first row Show all	>Potri.011G116100.1 pacid=42781157 polypeptide=Potri.011G116100.1.p locus=Potri.011G116100 ID=Potri.011G116100.1.v4.1 annot-version=v4.1 MSRSHFFKHLSYTLVHHHRPSYLSPPLSVYKFPHRWKKPSSSSLFSKSPISSSSSSSLFSSSSVTASPSTTTSESYAYLSVLIRCPKHVADSLSEALLCF GASSTSMDEDDDFDGSNEVCIDSIFPEFEDVDMCLSQAANSIGLKETPPYEVNLGDQYEWVRKTQESFHPVEVTEGLWIVPEWRSPPDVQATNIILNPGL AFGTGEHPTTKLCLLLLKKLIKGEELFLDYGTGSGVLAIAALKFGAALSVGFDIDPQAIMSARHNATLNSIGPETMELHLVPGKTCSSLDGREDEMVKEQ SCCGTGVISGTEKYDVVIANILLNPLLDLADHIVSYAKPWAVVGISGIISEQCSCIVDRYSMLLEDISVSEMDGWACVSGRKKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53920			ribosomal protein L11 methyltr...		Potri.011G116100 [exp]	0	1
AT5G64670			Ribosomal protein L18e/L15 sup...		Potri.001G324300 [exp]	4.12	0.8602
AT2G25830			YebC-related (.1)		Potri.006G238400 [exp]	16.43	0.8325
AT1G32730			unknown protein		Potri.001G148500 [exp]	20.09	0.8151
AT4G21720			unknown protein		Potri.004G041700 [exp]	21.63	0.7969
AT1G75330		OTC	ornithine carbamoyltransferase...		Potri.005G229400 [exp]	24.08	0.7828
AT5G39960			GTP binding;GTP binding (.1)		Potri.004G230600 [exp]	25.51	0.8054
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	26.15	0.7924	GFA2.1
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.015G038600 [exp]	31.81	0.7869	AMI3,TOC64.2
AT4G05400			copper ion binding (.1.2)		Potri.011G098000 [exp]	35.91	0.7799
AT1G79990			structural molecules (.1.2.3.4...		Potri.001G179500 [exp]	43.55	0.6968

Compare expression of checked genes

Potri.011G116100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.